Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed

Alopecurus japonicus is a weed in summer crop field, which is harmful to wheat crops. The complete plastome of A. japonicus was reported in this study. The genome was 136,408 bp in length, consisting of an 80,512 bp large single-copy region, a 12,836 bp small single-copy region, and two 21,530 bp in...

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Autores principales: Guo, Xiu-Xiu, Dai, Chen, Wang, Rong, Qu, Xiao-Jian, Zhang, Xue-Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748505/
https://www.ncbi.nlm.nih.gov/pubmed/33366573
http://dx.doi.org/10.1080/23802359.2019.1704189
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author Guo, Xiu-Xiu
Dai, Chen
Wang, Rong
Qu, Xiao-Jian
Zhang, Xue-Jie
author_facet Guo, Xiu-Xiu
Dai, Chen
Wang, Rong
Qu, Xiao-Jian
Zhang, Xue-Jie
author_sort Guo, Xiu-Xiu
collection PubMed
description Alopecurus japonicus is a weed in summer crop field, which is harmful to wheat crops. The complete plastome of A. japonicus was reported in this study. The genome was 136,408 bp in length, consisting of an 80,512 bp large single-copy region, a 12,836 bp small single-copy region, and two 21,530 bp inverted repeat regions. The GC content of this plastome was 38.3%. A total of 112 genes were annotated for the plastome of A. japonicus, containing 78 protein-coding genes (PCGs), 30 tRNAs, and 4 rRNAs. Phylogenetic analysis showed that A. japonicus was sister to Alopecurus aequalis.
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spelling pubmed-77485052020-12-22 Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed Guo, Xiu-Xiu Dai, Chen Wang, Rong Qu, Xiao-Jian Zhang, Xue-Jie Mitochondrial DNA B Resour Mitogenome Announcement Alopecurus japonicus is a weed in summer crop field, which is harmful to wheat crops. The complete plastome of A. japonicus was reported in this study. The genome was 136,408 bp in length, consisting of an 80,512 bp large single-copy region, a 12,836 bp small single-copy region, and two 21,530 bp inverted repeat regions. The GC content of this plastome was 38.3%. A total of 112 genes were annotated for the plastome of A. japonicus, containing 78 protein-coding genes (PCGs), 30 tRNAs, and 4 rRNAs. Phylogenetic analysis showed that A. japonicus was sister to Alopecurus aequalis. Taylor & Francis 2020-01-07 /pmc/articles/PMC7748505/ /pubmed/33366573 http://dx.doi.org/10.1080/23802359.2019.1704189 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Guo, Xiu-Xiu
Dai, Chen
Wang, Rong
Qu, Xiao-Jian
Zhang, Xue-Jie
Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed
title Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed
title_full Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed
title_fullStr Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed
title_full_unstemmed Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed
title_short Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed
title_sort characterization and phylogenetic analysis of the complete plastome of alopecurus japonicus (gramineae), an annual weed
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748505/
https://www.ncbi.nlm.nih.gov/pubmed/33366573
http://dx.doi.org/10.1080/23802359.2019.1704189
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