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Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)

Sorbaria arborea is a species which is endemic to China. We utilized next-generation Illumina sequencing technology to sequence and assemble its chloroplast genome. The 160,137 bp genome contained four main sections, including a pair of inverted repeat regions which were 26,332 bp in length, and a s...

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Autores principales: Sun, Wenguang, Chen, Zhe, Lv, Zhenyu, Li, Zhimin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748509/
https://www.ncbi.nlm.nih.gov/pubmed/33366887
http://dx.doi.org/10.1080/23802359.2020.1721359
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author Sun, Wenguang
Chen, Zhe
Lv, Zhenyu
Li, Zhimin
author_facet Sun, Wenguang
Chen, Zhe
Lv, Zhenyu
Li, Zhimin
author_sort Sun, Wenguang
collection PubMed
description Sorbaria arborea is a species which is endemic to China. We utilized next-generation Illumina sequencing technology to sequence and assemble its chloroplast genome. The 160,137 bp genome contained four main sections, including a pair of inverted repeat regions which were 26,332 bp in length, and a small single-copy region was 19,418 bp, as well as a large single-copy region, which was 88,055 bp. The genome had a GC content of 36.1% and contained 113 unique genes, including 4 rRNAs, 30 tRNAs, and 79 protein-coding genes. The phylogenetic relationship of 25 Rosaceae species was constructed based on their chloroplast genome sequences, which supported a close relationship between S. arborea and Amygdaloideae. This newly sequenced plastid genome provides useful information for assessing the genetic diversity and phylogenetic position of S. arborea.
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spelling pubmed-77485092020-12-22 Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) Sun, Wenguang Chen, Zhe Lv, Zhenyu Li, Zhimin Mitochondrial DNA B Resour Mitogenome Announcement Sorbaria arborea is a species which is endemic to China. We utilized next-generation Illumina sequencing technology to sequence and assemble its chloroplast genome. The 160,137 bp genome contained four main sections, including a pair of inverted repeat regions which were 26,332 bp in length, and a small single-copy region was 19,418 bp, as well as a large single-copy region, which was 88,055 bp. The genome had a GC content of 36.1% and contained 113 unique genes, including 4 rRNAs, 30 tRNAs, and 79 protein-coding genes. The phylogenetic relationship of 25 Rosaceae species was constructed based on their chloroplast genome sequences, which supported a close relationship between S. arborea and Amygdaloideae. This newly sequenced plastid genome provides useful information for assessing the genetic diversity and phylogenetic position of S. arborea. Taylor & Francis 2020-02-06 /pmc/articles/PMC7748509/ /pubmed/33366887 http://dx.doi.org/10.1080/23802359.2020.1721359 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sun, Wenguang
Chen, Zhe
Lv, Zhenyu
Li, Zhimin
Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)
title Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)
title_full Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)
title_fullStr Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)
title_full_unstemmed Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)
title_short Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)
title_sort sequencing and characterization of the complete chloroplast genome of sorbaria arborea (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748509/
https://www.ncbi.nlm.nih.gov/pubmed/33366887
http://dx.doi.org/10.1080/23802359.2020.1721359
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