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Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae)
Sorbaria arborea is a species which is endemic to China. We utilized next-generation Illumina sequencing technology to sequence and assemble its chloroplast genome. The 160,137 bp genome contained four main sections, including a pair of inverted repeat regions which were 26,332 bp in length, and a s...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748509/ https://www.ncbi.nlm.nih.gov/pubmed/33366887 http://dx.doi.org/10.1080/23802359.2020.1721359 |
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author | Sun, Wenguang Chen, Zhe Lv, Zhenyu Li, Zhimin |
author_facet | Sun, Wenguang Chen, Zhe Lv, Zhenyu Li, Zhimin |
author_sort | Sun, Wenguang |
collection | PubMed |
description | Sorbaria arborea is a species which is endemic to China. We utilized next-generation Illumina sequencing technology to sequence and assemble its chloroplast genome. The 160,137 bp genome contained four main sections, including a pair of inverted repeat regions which were 26,332 bp in length, and a small single-copy region was 19,418 bp, as well as a large single-copy region, which was 88,055 bp. The genome had a GC content of 36.1% and contained 113 unique genes, including 4 rRNAs, 30 tRNAs, and 79 protein-coding genes. The phylogenetic relationship of 25 Rosaceae species was constructed based on their chloroplast genome sequences, which supported a close relationship between S. arborea and Amygdaloideae. This newly sequenced plastid genome provides useful information for assessing the genetic diversity and phylogenetic position of S. arborea. |
format | Online Article Text |
id | pubmed-7748509 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77485092020-12-22 Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) Sun, Wenguang Chen, Zhe Lv, Zhenyu Li, Zhimin Mitochondrial DNA B Resour Mitogenome Announcement Sorbaria arborea is a species which is endemic to China. We utilized next-generation Illumina sequencing technology to sequence and assemble its chloroplast genome. The 160,137 bp genome contained four main sections, including a pair of inverted repeat regions which were 26,332 bp in length, and a small single-copy region was 19,418 bp, as well as a large single-copy region, which was 88,055 bp. The genome had a GC content of 36.1% and contained 113 unique genes, including 4 rRNAs, 30 tRNAs, and 79 protein-coding genes. The phylogenetic relationship of 25 Rosaceae species was constructed based on their chloroplast genome sequences, which supported a close relationship between S. arborea and Amygdaloideae. This newly sequenced plastid genome provides useful information for assessing the genetic diversity and phylogenetic position of S. arborea. Taylor & Francis 2020-02-06 /pmc/articles/PMC7748509/ /pubmed/33366887 http://dx.doi.org/10.1080/23802359.2020.1721359 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Sun, Wenguang Chen, Zhe Lv, Zhenyu Li, Zhimin Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) |
title | Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) |
title_full | Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) |
title_fullStr | Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) |
title_full_unstemmed | Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) |
title_short | Sequencing and characterization of the complete chloroplast genome of Sorbaria arborea (Rosaceae) |
title_sort | sequencing and characterization of the complete chloroplast genome of sorbaria arborea (rosaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748509/ https://www.ncbi.nlm.nih.gov/pubmed/33366887 http://dx.doi.org/10.1080/23802359.2020.1721359 |
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