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The complete chloroplast genome of Aloe vera from China as a Chinese herb

Aloe vera has been used as a Chinese herb and an ingredient in many cosmetic products in China. In this study, the complete chloroplast genome of A. vera was determined for more genetic data information. The chloroplast genome was 152,875 bp length as a typical quadripartite structure that contained...

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Autores principales: Ren, Jia-Ju, Wang, Jian, Lee, Kai-Ki, Deng, Hui, Xue, Han, Zhang, Nan, Zhao, Jing-Chun, Cao, Tianyi, Cui, Chang-Lei, Zhang, Xiu-Hang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748514/
https://www.ncbi.nlm.nih.gov/pubmed/33366888
http://dx.doi.org/10.1080/23802359.2020.1726229
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author Ren, Jia-Ju
Wang, Jian
Lee, Kai-Ki
Deng, Hui
Xue, Han
Zhang, Nan
Zhao, Jing-Chun
Cao, Tianyi
Cui, Chang-Lei
Zhang, Xiu-Hang
author_facet Ren, Jia-Ju
Wang, Jian
Lee, Kai-Ki
Deng, Hui
Xue, Han
Zhang, Nan
Zhao, Jing-Chun
Cao, Tianyi
Cui, Chang-Lei
Zhang, Xiu-Hang
author_sort Ren, Jia-Ju
collection PubMed
description Aloe vera has been used as a Chinese herb and an ingredient in many cosmetic products in China. In this study, the complete chloroplast genome of A. vera was determined for more genetic data information. The chloroplast genome was 152,875 bp length as a typical quadripartite structure that contained a large single-copy region (LSC) of 83,505 bp, a small single-copy region (SSC) of 16,178 bp and a pair of inverted-repeat regions (IRs) of 26,596 bp. The overall nucleotide composition of chloroplast genome is: 47,185 bp A (30.8%), 48,123 bp T (31.5%), 29,326 bp C (19.2%), 28,241 bp G (18.5%) and the total G + C content of 37.7%. Then, 131 genes were found that included 85 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic analysis showed that A. vera closely related to A. maculata in the phylogenetic relationship of the family Asphodelaceae by the Maximum-Likelihood (ML) method.
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spelling pubmed-77485142020-12-22 The complete chloroplast genome of Aloe vera from China as a Chinese herb Ren, Jia-Ju Wang, Jian Lee, Kai-Ki Deng, Hui Xue, Han Zhang, Nan Zhao, Jing-Chun Cao, Tianyi Cui, Chang-Lei Zhang, Xiu-Hang Mitochondrial DNA B Resour Mitogenome Announcement Aloe vera has been used as a Chinese herb and an ingredient in many cosmetic products in China. In this study, the complete chloroplast genome of A. vera was determined for more genetic data information. The chloroplast genome was 152,875 bp length as a typical quadripartite structure that contained a large single-copy region (LSC) of 83,505 bp, a small single-copy region (SSC) of 16,178 bp and a pair of inverted-repeat regions (IRs) of 26,596 bp. The overall nucleotide composition of chloroplast genome is: 47,185 bp A (30.8%), 48,123 bp T (31.5%), 29,326 bp C (19.2%), 28,241 bp G (18.5%) and the total G + C content of 37.7%. Then, 131 genes were found that included 85 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic analysis showed that A. vera closely related to A. maculata in the phylogenetic relationship of the family Asphodelaceae by the Maximum-Likelihood (ML) method. Taylor & Francis 2020-02-07 /pmc/articles/PMC7748514/ /pubmed/33366888 http://dx.doi.org/10.1080/23802359.2020.1726229 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ren, Jia-Ju
Wang, Jian
Lee, Kai-Ki
Deng, Hui
Xue, Han
Zhang, Nan
Zhao, Jing-Chun
Cao, Tianyi
Cui, Chang-Lei
Zhang, Xiu-Hang
The complete chloroplast genome of Aloe vera from China as a Chinese herb
title The complete chloroplast genome of Aloe vera from China as a Chinese herb
title_full The complete chloroplast genome of Aloe vera from China as a Chinese herb
title_fullStr The complete chloroplast genome of Aloe vera from China as a Chinese herb
title_full_unstemmed The complete chloroplast genome of Aloe vera from China as a Chinese herb
title_short The complete chloroplast genome of Aloe vera from China as a Chinese herb
title_sort complete chloroplast genome of aloe vera from china as a chinese herb
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748514/
https://www.ncbi.nlm.nih.gov/pubmed/33366888
http://dx.doi.org/10.1080/23802359.2020.1726229
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