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The complete chloroplast genome of Aloe vera from China as a Chinese herb
Aloe vera has been used as a Chinese herb and an ingredient in many cosmetic products in China. In this study, the complete chloroplast genome of A. vera was determined for more genetic data information. The chloroplast genome was 152,875 bp length as a typical quadripartite structure that contained...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748514/ https://www.ncbi.nlm.nih.gov/pubmed/33366888 http://dx.doi.org/10.1080/23802359.2020.1726229 |
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author | Ren, Jia-Ju Wang, Jian Lee, Kai-Ki Deng, Hui Xue, Han Zhang, Nan Zhao, Jing-Chun Cao, Tianyi Cui, Chang-Lei Zhang, Xiu-Hang |
author_facet | Ren, Jia-Ju Wang, Jian Lee, Kai-Ki Deng, Hui Xue, Han Zhang, Nan Zhao, Jing-Chun Cao, Tianyi Cui, Chang-Lei Zhang, Xiu-Hang |
author_sort | Ren, Jia-Ju |
collection | PubMed |
description | Aloe vera has been used as a Chinese herb and an ingredient in many cosmetic products in China. In this study, the complete chloroplast genome of A. vera was determined for more genetic data information. The chloroplast genome was 152,875 bp length as a typical quadripartite structure that contained a large single-copy region (LSC) of 83,505 bp, a small single-copy region (SSC) of 16,178 bp and a pair of inverted-repeat regions (IRs) of 26,596 bp. The overall nucleotide composition of chloroplast genome is: 47,185 bp A (30.8%), 48,123 bp T (31.5%), 29,326 bp C (19.2%), 28,241 bp G (18.5%) and the total G + C content of 37.7%. Then, 131 genes were found that included 85 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic analysis showed that A. vera closely related to A. maculata in the phylogenetic relationship of the family Asphodelaceae by the Maximum-Likelihood (ML) method. |
format | Online Article Text |
id | pubmed-7748514 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77485142020-12-22 The complete chloroplast genome of Aloe vera from China as a Chinese herb Ren, Jia-Ju Wang, Jian Lee, Kai-Ki Deng, Hui Xue, Han Zhang, Nan Zhao, Jing-Chun Cao, Tianyi Cui, Chang-Lei Zhang, Xiu-Hang Mitochondrial DNA B Resour Mitogenome Announcement Aloe vera has been used as a Chinese herb and an ingredient in many cosmetic products in China. In this study, the complete chloroplast genome of A. vera was determined for more genetic data information. The chloroplast genome was 152,875 bp length as a typical quadripartite structure that contained a large single-copy region (LSC) of 83,505 bp, a small single-copy region (SSC) of 16,178 bp and a pair of inverted-repeat regions (IRs) of 26,596 bp. The overall nucleotide composition of chloroplast genome is: 47,185 bp A (30.8%), 48,123 bp T (31.5%), 29,326 bp C (19.2%), 28,241 bp G (18.5%) and the total G + C content of 37.7%. Then, 131 genes were found that included 85 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic analysis showed that A. vera closely related to A. maculata in the phylogenetic relationship of the family Asphodelaceae by the Maximum-Likelihood (ML) method. Taylor & Francis 2020-02-07 /pmc/articles/PMC7748514/ /pubmed/33366888 http://dx.doi.org/10.1080/23802359.2020.1726229 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ren, Jia-Ju Wang, Jian Lee, Kai-Ki Deng, Hui Xue, Han Zhang, Nan Zhao, Jing-Chun Cao, Tianyi Cui, Chang-Lei Zhang, Xiu-Hang The complete chloroplast genome of Aloe vera from China as a Chinese herb |
title | The complete chloroplast genome of Aloe vera from China as a Chinese herb |
title_full | The complete chloroplast genome of Aloe vera from China as a Chinese herb |
title_fullStr | The complete chloroplast genome of Aloe vera from China as a Chinese herb |
title_full_unstemmed | The complete chloroplast genome of Aloe vera from China as a Chinese herb |
title_short | The complete chloroplast genome of Aloe vera from China as a Chinese herb |
title_sort | complete chloroplast genome of aloe vera from china as a chinese herb |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748514/ https://www.ncbi.nlm.nih.gov/pubmed/33366888 http://dx.doi.org/10.1080/23802359.2020.1726229 |
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