The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis

In this study, we firstly reported the complete chloroplast (cp) genome sequences of the Mangifera sylvatica from Nanning, Guangxi province, China. The complete wild mango cp genome size is 158063 bp with a typical small single-copy region (SSC, 18340 bp), a large single-copy region (LSC, 87008 bp)...

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Autores principales: Zhang, Yu, Ou, Ke-Wei, Huang, Guo-Di, Lu, Ye-Fei, Yang, Guo-Qian, Pang, Xin-Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748516/
https://www.ncbi.nlm.nih.gov/pubmed/33366727
http://dx.doi.org/10.1080/23802359.2020.1715286
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author Zhang, Yu
Ou, Ke-Wei
Huang, Guo-Di
Lu, Ye-Fei
Yang, Guo-Qian
Pang, Xin-Hua
author_facet Zhang, Yu
Ou, Ke-Wei
Huang, Guo-Di
Lu, Ye-Fei
Yang, Guo-Qian
Pang, Xin-Hua
author_sort Zhang, Yu
collection PubMed
description In this study, we firstly reported the complete chloroplast (cp) genome sequences of the Mangifera sylvatica from Nanning, Guangxi province, China. The complete wild mango cp genome size is 158063 bp with a typical small single-copy region (SSC, 18340 bp), a large single-copy region (LSC, 87008 bp) and a pair of inverted repeats (IRs, 26379 bp and 26379 bp respectively). Out of 112 unique annotated genes in mango cp genome, 78 found to be protein coding, 30 to be tRNA and 4 rRNA genes. Besides, we found 51 microsatellite sequences (SSRs) in the cp genome. Sequence alignment and ML analysis of 29 full plastome data revealed M. sylvatica shares the closest relationship with cultivated mango (M. indica) and form a sister group with Rhus chinensis within Anacardiaceae.
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spelling pubmed-77485162020-12-22 The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis Zhang, Yu Ou, Ke-Wei Huang, Guo-Di Lu, Ye-Fei Yang, Guo-Qian Pang, Xin-Hua Mitochondrial DNA B Resour Mitogenome Announcement In this study, we firstly reported the complete chloroplast (cp) genome sequences of the Mangifera sylvatica from Nanning, Guangxi province, China. The complete wild mango cp genome size is 158063 bp with a typical small single-copy region (SSC, 18340 bp), a large single-copy region (LSC, 87008 bp) and a pair of inverted repeats (IRs, 26379 bp and 26379 bp respectively). Out of 112 unique annotated genes in mango cp genome, 78 found to be protein coding, 30 to be tRNA and 4 rRNA genes. Besides, we found 51 microsatellite sequences (SSRs) in the cp genome. Sequence alignment and ML analysis of 29 full plastome data revealed M. sylvatica shares the closest relationship with cultivated mango (M. indica) and form a sister group with Rhus chinensis within Anacardiaceae. Taylor & Francis 2020-01-21 /pmc/articles/PMC7748516/ /pubmed/33366727 http://dx.doi.org/10.1080/23802359.2020.1715286 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Yu
Ou, Ke-Wei
Huang, Guo-Di
Lu, Ye-Fei
Yang, Guo-Qian
Pang, Xin-Hua
The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis
title The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis
title_full The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis
title_fullStr The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis
title_short The complete chloroplast genome sequence of Mangifera sylvatica Roxb. (Anacardiaceae) and its phylogenetic analysis
title_sort complete chloroplast genome sequence of mangifera sylvatica roxb. (anacardiaceae) and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748516/
https://www.ncbi.nlm.nih.gov/pubmed/33366727
http://dx.doi.org/10.1080/23802359.2020.1715286
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