The complete chloroplast genome of Korean Gastrodia elata Blume

The completed chloroplast genome of Gastrodia elata Blume (G. elata) from Korea was determined in this study. The cpDNA is 35,230 bp in length and lacked the large and small single copy (LSC and SSC) regions, due to the lost inverted repeat (IR). The overall AT content is 73.30%, and the cpDNA conta...

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Autores principales: Kang, Min-Jeong, Kim, Sang-Chul, Lee, Hyo-Ryeon, Lee, Sang-A, Lee, Jei-Wan, Kim, Tae-Dong, Park, Eung-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748522/
https://www.ncbi.nlm.nih.gov/pubmed/33366853
http://dx.doi.org/10.1080/23802359.2020.1721346
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author Kang, Min-Jeong
Kim, Sang-Chul
Lee, Hyo-Ryeon
Lee, Sang-A
Lee, Jei-Wan
Kim, Tae-Dong
Park, Eung-Jun
author_facet Kang, Min-Jeong
Kim, Sang-Chul
Lee, Hyo-Ryeon
Lee, Sang-A
Lee, Jei-Wan
Kim, Tae-Dong
Park, Eung-Jun
author_sort Kang, Min-Jeong
collection PubMed
description The completed chloroplast genome of Gastrodia elata Blume (G. elata) from Korea was determined in this study. The cpDNA is 35,230 bp in length and lacked the large and small single copy (LSC and SSC) regions, due to the lost inverted repeat (IR). The overall AT content is 73.30%, and the cpDNA contains 20 protein-coding genes, 5 tRNA genes, and 3 rRNA genes. Remarkably, the Korean G. elata cp genome was 74 bp smaller than that of the Chinese G. elata. It revealed substantial sequence variants 495 SNPs and 75 InDels between the two G. elata genomes.
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spelling pubmed-77485222020-12-22 The complete chloroplast genome of Korean Gastrodia elata Blume Kang, Min-Jeong Kim, Sang-Chul Lee, Hyo-Ryeon Lee, Sang-A Lee, Jei-Wan Kim, Tae-Dong Park, Eung-Jun Mitochondrial DNA B Resour Mitogenome Announcement The completed chloroplast genome of Gastrodia elata Blume (G. elata) from Korea was determined in this study. The cpDNA is 35,230 bp in length and lacked the large and small single copy (LSC and SSC) regions, due to the lost inverted repeat (IR). The overall AT content is 73.30%, and the cpDNA contains 20 protein-coding genes, 5 tRNA genes, and 3 rRNA genes. Remarkably, the Korean G. elata cp genome was 74 bp smaller than that of the Chinese G. elata. It revealed substantial sequence variants 495 SNPs and 75 InDels between the two G. elata genomes. Taylor & Francis 2020-02-03 /pmc/articles/PMC7748522/ /pubmed/33366853 http://dx.doi.org/10.1080/23802359.2020.1721346 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Kang, Min-Jeong
Kim, Sang-Chul
Lee, Hyo-Ryeon
Lee, Sang-A
Lee, Jei-Wan
Kim, Tae-Dong
Park, Eung-Jun
The complete chloroplast genome of Korean Gastrodia elata Blume
title The complete chloroplast genome of Korean Gastrodia elata Blume
title_full The complete chloroplast genome of Korean Gastrodia elata Blume
title_fullStr The complete chloroplast genome of Korean Gastrodia elata Blume
title_full_unstemmed The complete chloroplast genome of Korean Gastrodia elata Blume
title_short The complete chloroplast genome of Korean Gastrodia elata Blume
title_sort complete chloroplast genome of korean gastrodia elata blume
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748522/
https://www.ncbi.nlm.nih.gov/pubmed/33366853
http://dx.doi.org/10.1080/23802359.2020.1721346
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