The complete chloroplast genome sequence of Altingia excelsa

The first complete chloroplast genome (cpDNA) sequence of Altingia excelsa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,861 bp in length, contains a large single copy region (LSC) of 89,126 bp and a small single copy region (SSC) of 19,011 bp, which wer...

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Detalles Bibliográficos
Autores principales: Yang, Dejun, Qiu, Qiong, Xu, Linhong, Xu, Yumei, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748526/
https://www.ncbi.nlm.nih.gov/pubmed/33366635
http://dx.doi.org/10.1080/23802359.2019.1710277
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author Yang, Dejun
Qiu, Qiong
Xu, Linhong
Xu, Yumei
Wang, Yi
author_facet Yang, Dejun
Qiu, Qiong
Xu, Linhong
Xu, Yumei
Wang, Yi
author_sort Yang, Dejun
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Altingia excelsa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,861 bp in length, contains a large single copy region (LSC) of 89,126 bp and a small single copy region (SSC) of 19,011 bp, which were separated by a pair of inverted repeats (IR) regions of 26,362 bp each. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Phylogenomic analysis showed that A. excelsa and Liquidambar formosana clustered in a clade in Saxifragales order.
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spelling pubmed-77485262020-12-22 The complete chloroplast genome sequence of Altingia excelsa Yang, Dejun Qiu, Qiong Xu, Linhong Xu, Yumei Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Altingia excelsa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,861 bp in length, contains a large single copy region (LSC) of 89,126 bp and a small single copy region (SSC) of 19,011 bp, which were separated by a pair of inverted repeats (IR) regions of 26,362 bp each. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Phylogenomic analysis showed that A. excelsa and Liquidambar formosana clustered in a clade in Saxifragales order. Taylor & Francis 2020-01-14 /pmc/articles/PMC7748526/ /pubmed/33366635 http://dx.doi.org/10.1080/23802359.2019.1710277 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yang, Dejun
Qiu, Qiong
Xu, Linhong
Xu, Yumei
Wang, Yi
The complete chloroplast genome sequence of Altingia excelsa
title The complete chloroplast genome sequence of Altingia excelsa
title_full The complete chloroplast genome sequence of Altingia excelsa
title_fullStr The complete chloroplast genome sequence of Altingia excelsa
title_full_unstemmed The complete chloroplast genome sequence of Altingia excelsa
title_short The complete chloroplast genome sequence of Altingia excelsa
title_sort complete chloroplast genome sequence of altingia excelsa
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748526/
https://www.ncbi.nlm.nih.gov/pubmed/33366635
http://dx.doi.org/10.1080/23802359.2019.1710277
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