Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales

Trophis caucana, which belongs to Moraceae, is a tree species lived in a humid climate at low and middle altitudes. The complete chloroplast (cp) genome of T. caucana was sequenced and assembled in this study. The cp genome is 161,445 bp in length with comprising two copies of inverted region (IR, 2...

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Autores principales: Deng, Pan, Sun, Nianyi, Liu, Luxian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748527/
https://www.ncbi.nlm.nih.gov/pubmed/33366737
http://dx.doi.org/10.1080/23802359.2020.1715304
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author Deng, Pan
Sun, Nianyi
Liu, Luxian
author_facet Deng, Pan
Sun, Nianyi
Liu, Luxian
author_sort Deng, Pan
collection PubMed
description Trophis caucana, which belongs to Moraceae, is a tree species lived in a humid climate at low and middle altitudes. The complete chloroplast (cp) genome of T. caucana was sequenced and assembled in this study. The cp genome is 161,445 bp in length with comprising two copies of inverted region (IR, 25,894 bp) separated by the large single copy (LSC, 89,633 bp) and small single copy (SSC, 20,024 bp) regions. It encodes 111 unique genes, consisting of 77 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Phylogenetic analysis indicates that T. caucana is sister to Antiaris toxicaria in Moraceae family.
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spelling pubmed-77485272020-12-22 Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales Deng, Pan Sun, Nianyi Liu, Luxian Mitochondrial DNA B Resour Mitogenome Announcement Trophis caucana, which belongs to Moraceae, is a tree species lived in a humid climate at low and middle altitudes. The complete chloroplast (cp) genome of T. caucana was sequenced and assembled in this study. The cp genome is 161,445 bp in length with comprising two copies of inverted region (IR, 25,894 bp) separated by the large single copy (LSC, 89,633 bp) and small single copy (SSC, 20,024 bp) regions. It encodes 111 unique genes, consisting of 77 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Phylogenetic analysis indicates that T. caucana is sister to Antiaris toxicaria in Moraceae family. Taylor & Francis 2020-01-21 /pmc/articles/PMC7748527/ /pubmed/33366737 http://dx.doi.org/10.1080/23802359.2020.1715304 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Deng, Pan
Sun, Nianyi
Liu, Luxian
Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales
title Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales
title_full Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales
title_fullStr Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales
title_full_unstemmed Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales
title_short Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales
title_sort complete chloroplast genome of trophis caucana and its phylogenetic implication in rosales
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748527/
https://www.ncbi.nlm.nih.gov/pubmed/33366737
http://dx.doi.org/10.1080/23802359.2020.1715304
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