The complete chloroplast genome of Saposhnikovia divaricata

Saposhnikovia divaricata (Trucz.) Schischk. is a traditional Chinese herbal medicine widely distributed in Eastern Siberia and Northern Asia. In this research, we assembled and characterized the complete chloroplast genome sequence of S. divaricata from high-throughput sequencing data. The chloropla...

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Autores principales: Bao, Zhenzhen, Zhu, Ziyan, Zhang, Haijiang, Zhong, Yuan, Wang, Weiqi, Zhang, Jingzheng, Wu, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748531/
https://www.ncbi.nlm.nih.gov/pubmed/33366556
http://dx.doi.org/10.1080/23802359.2019.1704200
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author Bao, Zhenzhen
Zhu, Ziyan
Zhang, Haijiang
Zhong, Yuan
Wang, Weiqi
Zhang, Jingzheng
Wu, Jie
author_facet Bao, Zhenzhen
Zhu, Ziyan
Zhang, Haijiang
Zhong, Yuan
Wang, Weiqi
Zhang, Jingzheng
Wu, Jie
author_sort Bao, Zhenzhen
collection PubMed
description Saposhnikovia divaricata (Trucz.) Schischk. is a traditional Chinese herbal medicine widely distributed in Eastern Siberia and Northern Asia. In this research, we assembled and characterized the complete chloroplast genome sequence of S. divaricata from high-throughput sequencing data. The chloroplast genome was 147,834 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 93,202 bp and 17,324 bp, respectively, which were separated by a pair of 18,654 bp inverted repeat (IR) regions. The genome is expected to contain 129 genes, including 85 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The total GC content of the genome is 37.5%. A phylogenetic tree reconstructed by 40 chloroplast genomes reveals that S. divaricata is mostly related to Ledebouriella seseloides.
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spelling pubmed-77485312020-12-22 The complete chloroplast genome of Saposhnikovia divaricata Bao, Zhenzhen Zhu, Ziyan Zhang, Haijiang Zhong, Yuan Wang, Weiqi Zhang, Jingzheng Wu, Jie Mitochondrial DNA B Resour Mitogenome Announcement Saposhnikovia divaricata (Trucz.) Schischk. is a traditional Chinese herbal medicine widely distributed in Eastern Siberia and Northern Asia. In this research, we assembled and characterized the complete chloroplast genome sequence of S. divaricata from high-throughput sequencing data. The chloroplast genome was 147,834 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 93,202 bp and 17,324 bp, respectively, which were separated by a pair of 18,654 bp inverted repeat (IR) regions. The genome is expected to contain 129 genes, including 85 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The total GC content of the genome is 37.5%. A phylogenetic tree reconstructed by 40 chloroplast genomes reveals that S. divaricata is mostly related to Ledebouriella seseloides. Taylor & Francis 2019-12-27 /pmc/articles/PMC7748531/ /pubmed/33366556 http://dx.doi.org/10.1080/23802359.2019.1704200 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Bao, Zhenzhen
Zhu, Ziyan
Zhang, Haijiang
Zhong, Yuan
Wang, Weiqi
Zhang, Jingzheng
Wu, Jie
The complete chloroplast genome of Saposhnikovia divaricata
title The complete chloroplast genome of Saposhnikovia divaricata
title_full The complete chloroplast genome of Saposhnikovia divaricata
title_fullStr The complete chloroplast genome of Saposhnikovia divaricata
title_full_unstemmed The complete chloroplast genome of Saposhnikovia divaricata
title_short The complete chloroplast genome of Saposhnikovia divaricata
title_sort complete chloroplast genome of saposhnikovia divaricata
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748531/
https://www.ncbi.nlm.nih.gov/pubmed/33366556
http://dx.doi.org/10.1080/23802359.2019.1704200
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