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The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
Cuminum cyminum (Apiaceae) is an economically important plant, whose fruits are usually used as flavoring, and also have pharmacological activities such as antioxidant, antibacterial, hypolipidemic, and so on. In this study, we assembled and annotated complete chloroplast (cp) genome sequence of C....
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748533/ https://www.ncbi.nlm.nih.gov/pubmed/33366883 http://dx.doi.org/10.1080/23802359.2020.1722037 |
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author | Zhou, Jing Liu, Zhenwen |
author_facet | Zhou, Jing Liu, Zhenwen |
author_sort | Zhou, Jing |
collection | PubMed |
description | Cuminum cyminum (Apiaceae) is an economically important plant, whose fruits are usually used as flavoring, and also have pharmacological activities such as antioxidant, antibacterial, hypolipidemic, and so on. In this study, we assembled and annotated complete chloroplast (cp) genome sequence of C. cyminum. The results showed that the complete cp genome of C. cyminum was 157,839 bp in length, consisting of a large single-copy (LSC) region of 83,927bp, a small single-copy (SSC) region of 17,598bp, and two inverted repeat regions (IRa and IRb) of 28,157bp. In total, 131 genes were annotated, comprising of 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that C. cyminum belongs to the tribe Scandiceae, and showed close relationship with Daucus carota. |
format | Online Article Text |
id | pubmed-7748533 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77485332020-12-22 The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum Zhou, Jing Liu, Zhenwen Mitochondrial DNA B Resour Mitogenome Announcement Cuminum cyminum (Apiaceae) is an economically important plant, whose fruits are usually used as flavoring, and also have pharmacological activities such as antioxidant, antibacterial, hypolipidemic, and so on. In this study, we assembled and annotated complete chloroplast (cp) genome sequence of C. cyminum. The results showed that the complete cp genome of C. cyminum was 157,839 bp in length, consisting of a large single-copy (LSC) region of 83,927bp, a small single-copy (SSC) region of 17,598bp, and two inverted repeat regions (IRa and IRb) of 28,157bp. In total, 131 genes were annotated, comprising of 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that C. cyminum belongs to the tribe Scandiceae, and showed close relationship with Daucus carota. Taylor & Francis 2020-02-07 /pmc/articles/PMC7748533/ /pubmed/33366883 http://dx.doi.org/10.1080/23802359.2020.1722037 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhou, Jing Liu, Zhenwen The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum |
title | The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum |
title_full | The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum |
title_fullStr | The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum |
title_full_unstemmed | The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum |
title_short | The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum |
title_sort | complete chloroplast genome and phylogenetic analysis of cuminum cyminum |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748533/ https://www.ncbi.nlm.nih.gov/pubmed/33366883 http://dx.doi.org/10.1080/23802359.2020.1722037 |
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