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The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum

Cuminum cyminum (Apiaceae) is an economically important plant, whose fruits are usually used as flavoring, and also have pharmacological activities such as antioxidant, antibacterial, hypolipidemic, and so on. In this study, we assembled and annotated complete chloroplast (cp) genome sequence of C....

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Autores principales: Zhou, Jing, Liu, Zhenwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748533/
https://www.ncbi.nlm.nih.gov/pubmed/33366883
http://dx.doi.org/10.1080/23802359.2020.1722037
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author Zhou, Jing
Liu, Zhenwen
author_facet Zhou, Jing
Liu, Zhenwen
author_sort Zhou, Jing
collection PubMed
description Cuminum cyminum (Apiaceae) is an economically important plant, whose fruits are usually used as flavoring, and also have pharmacological activities such as antioxidant, antibacterial, hypolipidemic, and so on. In this study, we assembled and annotated complete chloroplast (cp) genome sequence of C. cyminum. The results showed that the complete cp genome of C. cyminum was 157,839 bp in length, consisting of a large single-copy (LSC) region of 83,927bp, a small single-copy (SSC) region of 17,598bp, and two inverted repeat regions (IRa and IRb) of 28,157bp. In total, 131 genes were annotated, comprising of 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that C. cyminum belongs to the tribe Scandiceae, and showed close relationship with Daucus carota.
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spelling pubmed-77485332020-12-22 The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum Zhou, Jing Liu, Zhenwen Mitochondrial DNA B Resour Mitogenome Announcement Cuminum cyminum (Apiaceae) is an economically important plant, whose fruits are usually used as flavoring, and also have pharmacological activities such as antioxidant, antibacterial, hypolipidemic, and so on. In this study, we assembled and annotated complete chloroplast (cp) genome sequence of C. cyminum. The results showed that the complete cp genome of C. cyminum was 157,839 bp in length, consisting of a large single-copy (LSC) region of 83,927bp, a small single-copy (SSC) region of 17,598bp, and two inverted repeat regions (IRa and IRb) of 28,157bp. In total, 131 genes were annotated, comprising of 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that C. cyminum belongs to the tribe Scandiceae, and showed close relationship with Daucus carota. Taylor & Francis 2020-02-07 /pmc/articles/PMC7748533/ /pubmed/33366883 http://dx.doi.org/10.1080/23802359.2020.1722037 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhou, Jing
Liu, Zhenwen
The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
title The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
title_full The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
title_fullStr The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
title_full_unstemmed The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
title_short The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
title_sort complete chloroplast genome and phylogenetic analysis of cuminum cyminum
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748533/
https://www.ncbi.nlm.nih.gov/pubmed/33366883
http://dx.doi.org/10.1080/23802359.2020.1722037
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