The complete chloroplast genome sequence of Litsea garrettii

The first complete chloroplast genome (cpDNA) sequence of Litsea garrettii was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,011 bp in length, contains a large single-copy region (LSC) of 93,697 bp and a small single-copy region (SSC) of 18,826 bp, which wer...

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Detalles Bibliográficos
Autores principales: Qiu, Qiong, Yang, Dejun, Xu, Linhong, Xu, Yumei, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748538/
https://www.ncbi.nlm.nih.gov/pubmed/33366894
http://dx.doi.org/10.1080/23802359.2020.1726225
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author Qiu, Qiong
Yang, Dejun
Xu, Linhong
Xu, Yumei
Wang, Yi
author_facet Qiu, Qiong
Yang, Dejun
Xu, Linhong
Xu, Yumei
Wang, Yi
author_sort Qiu, Qiong
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Litsea garrettii was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,011 bp in length, contains a large single-copy region (LSC) of 93,697 bp and a small single-copy region (SSC) of 18,826 bp, which were separated by a pair of inverted repeat (IR) regions of 20,744 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. Further phylogenomic analysis showed that L. garrettii and Parasassafras confertiflorum clustered in a clade in Lauraceae family.
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spelling pubmed-77485382020-12-22 The complete chloroplast genome sequence of Litsea garrettii Qiu, Qiong Yang, Dejun Xu, Linhong Xu, Yumei Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Litsea garrettii was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,011 bp in length, contains a large single-copy region (LSC) of 93,697 bp and a small single-copy region (SSC) of 18,826 bp, which were separated by a pair of inverted repeat (IR) regions of 20,744 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. Further phylogenomic analysis showed that L. garrettii and Parasassafras confertiflorum clustered in a clade in Lauraceae family. Taylor & Francis 2020-02-11 /pmc/articles/PMC7748538/ /pubmed/33366894 http://dx.doi.org/10.1080/23802359.2020.1726225 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Qiu, Qiong
Yang, Dejun
Xu, Linhong
Xu, Yumei
Wang, Yi
The complete chloroplast genome sequence of Litsea garrettii
title The complete chloroplast genome sequence of Litsea garrettii
title_full The complete chloroplast genome sequence of Litsea garrettii
title_fullStr The complete chloroplast genome sequence of Litsea garrettii
title_full_unstemmed The complete chloroplast genome sequence of Litsea garrettii
title_short The complete chloroplast genome sequence of Litsea garrettii
title_sort complete chloroplast genome sequence of litsea garrettii
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748538/
https://www.ncbi.nlm.nih.gov/pubmed/33366894
http://dx.doi.org/10.1080/23802359.2020.1726225
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