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Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China

Polygonatum sibiricum is a famous and well-known TCH (Traditional Chinese Herb) in China. In this paper, the complete chloroplast genome of P. sibiricum was studied and illustrated to add more genetic information and data. The chloroplast genome is 152,960 bp in length and a typical quadripartite st...

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Autores principales: Pan, Jiaoyi, Lu, Weijia, Chen, Shishi, Cao, Tianyi, Chi, Linfeng, He, Fule
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748542/
https://www.ncbi.nlm.nih.gov/pubmed/33366632
http://dx.doi.org/10.1080/23802359.2019.1704193
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author Pan, Jiaoyi
Lu, Weijia
Chen, Shishi
Cao, Tianyi
Chi, Linfeng
He, Fule
author_facet Pan, Jiaoyi
Lu, Weijia
Chen, Shishi
Cao, Tianyi
Chi, Linfeng
He, Fule
author_sort Pan, Jiaoyi
collection PubMed
description Polygonatum sibiricum is a famous and well-known TCH (Traditional Chinese Herb) in China. In this paper, the complete chloroplast genome of P. sibiricum was studied and illustrated to add more genetic information and data. The chloroplast genome is 152,960 bp in length and a typical quadripartite structure, which exhibits a large single-copy region (LSC) of 81,471 bp, a small single-copy region (SSC) of 18,485 bp and a pair of inverted-repeat regions (IRs) of 26,502 bp in each. The overall nucleotide composition of chloroplast genome is: 30.7% A, 31.4% T, 19.3% C, 18.6% G and the total GC content 37.9%. A total of 136 genes were annotated that included 90 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic ML tree shown that P. sibiricum is closely related to P. cyrtonema on genetic position relationship by the Maximum-Likelihood (ML) method.
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spelling pubmed-77485422020-12-22 Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China Pan, Jiaoyi Lu, Weijia Chen, Shishi Cao, Tianyi Chi, Linfeng He, Fule Mitochondrial DNA B Resour Mitogenome Announcement Polygonatum sibiricum is a famous and well-known TCH (Traditional Chinese Herb) in China. In this paper, the complete chloroplast genome of P. sibiricum was studied and illustrated to add more genetic information and data. The chloroplast genome is 152,960 bp in length and a typical quadripartite structure, which exhibits a large single-copy region (LSC) of 81,471 bp, a small single-copy region (SSC) of 18,485 bp and a pair of inverted-repeat regions (IRs) of 26,502 bp in each. The overall nucleotide composition of chloroplast genome is: 30.7% A, 31.4% T, 19.3% C, 18.6% G and the total GC content 37.9%. A total of 136 genes were annotated that included 90 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic ML tree shown that P. sibiricum is closely related to P. cyrtonema on genetic position relationship by the Maximum-Likelihood (ML) method. Taylor & Francis 2020-01-14 /pmc/articles/PMC7748542/ /pubmed/33366632 http://dx.doi.org/10.1080/23802359.2019.1704193 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Pan, Jiaoyi
Lu, Weijia
Chen, Shishi
Cao, Tianyi
Chi, Linfeng
He, Fule
Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China
title Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China
title_full Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China
title_fullStr Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China
title_full_unstemmed Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China
title_short Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China
title_sort characterization of the complete chloroplast genome of polygonatum sibiricum (liliaceae), a well-known herb to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748542/
https://www.ncbi.nlm.nih.gov/pubmed/33366632
http://dx.doi.org/10.1080/23802359.2019.1704193
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