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Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China
Polygonatum sibiricum is a famous and well-known TCH (Traditional Chinese Herb) in China. In this paper, the complete chloroplast genome of P. sibiricum was studied and illustrated to add more genetic information and data. The chloroplast genome is 152,960 bp in length and a typical quadripartite st...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748542/ https://www.ncbi.nlm.nih.gov/pubmed/33366632 http://dx.doi.org/10.1080/23802359.2019.1704193 |
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author | Pan, Jiaoyi Lu, Weijia Chen, Shishi Cao, Tianyi Chi, Linfeng He, Fule |
author_facet | Pan, Jiaoyi Lu, Weijia Chen, Shishi Cao, Tianyi Chi, Linfeng He, Fule |
author_sort | Pan, Jiaoyi |
collection | PubMed |
description | Polygonatum sibiricum is a famous and well-known TCH (Traditional Chinese Herb) in China. In this paper, the complete chloroplast genome of P. sibiricum was studied and illustrated to add more genetic information and data. The chloroplast genome is 152,960 bp in length and a typical quadripartite structure, which exhibits a large single-copy region (LSC) of 81,471 bp, a small single-copy region (SSC) of 18,485 bp and a pair of inverted-repeat regions (IRs) of 26,502 bp in each. The overall nucleotide composition of chloroplast genome is: 30.7% A, 31.4% T, 19.3% C, 18.6% G and the total GC content 37.9%. A total of 136 genes were annotated that included 90 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic ML tree shown that P. sibiricum is closely related to P. cyrtonema on genetic position relationship by the Maximum-Likelihood (ML) method. |
format | Online Article Text |
id | pubmed-7748542 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77485422020-12-22 Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China Pan, Jiaoyi Lu, Weijia Chen, Shishi Cao, Tianyi Chi, Linfeng He, Fule Mitochondrial DNA B Resour Mitogenome Announcement Polygonatum sibiricum is a famous and well-known TCH (Traditional Chinese Herb) in China. In this paper, the complete chloroplast genome of P. sibiricum was studied and illustrated to add more genetic information and data. The chloroplast genome is 152,960 bp in length and a typical quadripartite structure, which exhibits a large single-copy region (LSC) of 81,471 bp, a small single-copy region (SSC) of 18,485 bp and a pair of inverted-repeat regions (IRs) of 26,502 bp in each. The overall nucleotide composition of chloroplast genome is: 30.7% A, 31.4% T, 19.3% C, 18.6% G and the total GC content 37.9%. A total of 136 genes were annotated that included 90 protein-coding genes (PCGs), 38 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). The phylogenetic ML tree shown that P. sibiricum is closely related to P. cyrtonema on genetic position relationship by the Maximum-Likelihood (ML) method. Taylor & Francis 2020-01-14 /pmc/articles/PMC7748542/ /pubmed/33366632 http://dx.doi.org/10.1080/23802359.2019.1704193 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Pan, Jiaoyi Lu, Weijia Chen, Shishi Cao, Tianyi Chi, Linfeng He, Fule Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China |
title | Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China |
title_full | Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China |
title_fullStr | Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China |
title_full_unstemmed | Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China |
title_short | Characterization of the complete chloroplast genome of Polygonatum sibiricum (Liliaceae), a well-known herb to China |
title_sort | characterization of the complete chloroplast genome of polygonatum sibiricum (liliaceae), a well-known herb to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748542/ https://www.ncbi.nlm.nih.gov/pubmed/33366632 http://dx.doi.org/10.1080/23802359.2019.1704193 |
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