Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan

Prunus itosakura is a flowering tree species with high ornamental and economic values. We determined the first complete chloroplast genome of P. itosakura using genome skimming approach. The cp genome was 157,813 bp long, with a large single-copy region (LSC) of 85,931 bp and a small single-copy reg...

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Autores principales: Sheng, Dong, Zhou, Lu-Dan, Katsuki, Toshio, Sun, Zhong-Shuai, Liu, Xin-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748579/
https://www.ncbi.nlm.nih.gov/pubmed/33366513
http://dx.doi.org/10.1080/23802359.2019.1699459
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author Sheng, Dong
Zhou, Lu-Dan
Katsuki, Toshio
Sun, Zhong-Shuai
Liu, Xin-Hong
author_facet Sheng, Dong
Zhou, Lu-Dan
Katsuki, Toshio
Sun, Zhong-Shuai
Liu, Xin-Hong
author_sort Sheng, Dong
collection PubMed
description Prunus itosakura is a flowering tree species with high ornamental and economic values. We determined the first complete chloroplast genome of P. itosakura using genome skimming approach. The cp genome was 157,813 bp long, with a large single-copy region (LSC) of 85,931 bp and a small single-copy region (SSC) of 19,120 bp separated by a pair of inverted repeats (IRs) of 26,381 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. itosakura is closely related with Prunus subhirtella var. subhirtella.
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spelling pubmed-77485792020-12-22 Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan Sheng, Dong Zhou, Lu-Dan Katsuki, Toshio Sun, Zhong-Shuai Liu, Xin-Hong Mitochondrial DNA B Resour Mitogenome Announcement Prunus itosakura is a flowering tree species with high ornamental and economic values. We determined the first complete chloroplast genome of P. itosakura using genome skimming approach. The cp genome was 157,813 bp long, with a large single-copy region (LSC) of 85,931 bp and a small single-copy region (SSC) of 19,120 bp separated by a pair of inverted repeats (IRs) of 26,381 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. itosakura is closely related with Prunus subhirtella var. subhirtella. Taylor & Francis 2019-12-13 /pmc/articles/PMC7748579/ /pubmed/33366513 http://dx.doi.org/10.1080/23802359.2019.1699459 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sheng, Dong
Zhou, Lu-Dan
Katsuki, Toshio
Sun, Zhong-Shuai
Liu, Xin-Hong
Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan
title Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan
title_full Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan
title_fullStr Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan
title_full_unstemmed Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan
title_short Complete chloroplast genome of Prunus itosakura (Rosaceae), a wild flowering cherry from Japan
title_sort complete chloroplast genome of prunus itosakura (rosaceae), a wild flowering cherry from japan
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748579/
https://www.ncbi.nlm.nih.gov/pubmed/33366513
http://dx.doi.org/10.1080/23802359.2019.1699459
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