Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China

Davidia involucrata Baill. is a kind of tertiary paleotropical plant floristic relic species unique to China. This rare plant is disappearing due to poor adaptability and serious poaching. We first assembled the complete chloroplast (cp) genome of Davidia involucrata Baill. by Illumina paired-end re...

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Autores principales: Qi, Zhuo, Jiang, Zhenzhong, Jiao, Peng, Qu, Jing, Liu, Siyan, Yao, Dan, Wang, Piwu, Guan, Shuyan, Ma, Yiyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748617/
https://www.ncbi.nlm.nih.gov/pubmed/33366493
http://dx.doi.org/10.1080/23802359.2019.1699468
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author Qi, Zhuo
Jiang, Zhenzhong
Jiao, Peng
Qu, Jing
Liu, Siyan
Yao, Dan
Wang, Piwu
Guan, Shuyan
Ma, Yiyong
author_facet Qi, Zhuo
Jiang, Zhenzhong
Jiao, Peng
Qu, Jing
Liu, Siyan
Yao, Dan
Wang, Piwu
Guan, Shuyan
Ma, Yiyong
author_sort Qi, Zhuo
collection PubMed
description Davidia involucrata Baill. is a kind of tertiary paleotropical plant floristic relic species unique to China. This rare plant is disappearing due to poor adaptability and serious poaching. We first assembled the complete chloroplast (cp) genome of Davidia involucrata Baill. by Illumina paired-end reads data. The whole genome was 169,085 bp, consisting of a pair of inverted repeats of 169,379 bp, large single copy region and a small single copy region (96,712 and 67,667 bp in length, respectively). The cp genome contained 90 genes, including 64 protein-coding genes, 22 trRNA genes and 4 rRNA genes. The overall GC content of the whole genome was 38.04%. A neighbor-joining phylogenetic analysis demonstrated a close relationship between Davidia involucrata Baill. and Nyssa yunnanensis.
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spelling pubmed-77486172020-12-22 Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China Qi, Zhuo Jiang, Zhenzhong Jiao, Peng Qu, Jing Liu, Siyan Yao, Dan Wang, Piwu Guan, Shuyan Ma, Yiyong Mitochondrial DNA B Resour Mitogenome Announcement Davidia involucrata Baill. is a kind of tertiary paleotropical plant floristic relic species unique to China. This rare plant is disappearing due to poor adaptability and serious poaching. We first assembled the complete chloroplast (cp) genome of Davidia involucrata Baill. by Illumina paired-end reads data. The whole genome was 169,085 bp, consisting of a pair of inverted repeats of 169,379 bp, large single copy region and a small single copy region (96,712 and 67,667 bp in length, respectively). The cp genome contained 90 genes, including 64 protein-coding genes, 22 trRNA genes and 4 rRNA genes. The overall GC content of the whole genome was 38.04%. A neighbor-joining phylogenetic analysis demonstrated a close relationship between Davidia involucrata Baill. and Nyssa yunnanensis. Taylor & Francis 2019-12-12 /pmc/articles/PMC7748617/ /pubmed/33366493 http://dx.doi.org/10.1080/23802359.2019.1699468 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Qi, Zhuo
Jiang, Zhenzhong
Jiao, Peng
Qu, Jing
Liu, Siyan
Yao, Dan
Wang, Piwu
Guan, Shuyan
Ma, Yiyong
Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China
title Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China
title_full Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China
title_fullStr Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China
title_full_unstemmed Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China
title_short Characterization of the complete chloroplast genome of Davidia involucrata Baill. (Nysssaceae), an endangered species endemic to China
title_sort characterization of the complete chloroplast genome of davidia involucrata baill. (nysssaceae), an endangered species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748617/
https://www.ncbi.nlm.nih.gov/pubmed/33366493
http://dx.doi.org/10.1080/23802359.2019.1699468
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