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The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)
In this study, we analyzed the entire mitochondrial genome of Flavoperla hatakeyamae, which has 15,730 bp in length. This complete mitochondrial genome possessed 13 protein coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. The nucleotide composition of the comp...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748619/ https://www.ncbi.nlm.nih.gov/pubmed/33366857 http://dx.doi.org/10.1080/23802359.2020.1721350 |
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author | Hao, Caihao Wang, Guochang Li, Weihai Cao, Jinjun |
author_facet | Hao, Caihao Wang, Guochang Li, Weihai Cao, Jinjun |
author_sort | Hao, Caihao |
collection | PubMed |
description | In this study, we analyzed the entire mitochondrial genome of Flavoperla hatakeyamae, which has 15,730 bp in length. This complete mitochondrial genome possessed 13 protein coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. The nucleotide composition of the complete sequence of mitochondrial genome was accounting for 35.0%, T for 31.3%, C for 21.2%, G for 12.5%, and A + T for 66.3%. Among the 13 protein-coding genes, the starting codon of 12 protein-coding genes was ATN except the starting codon of COII was ACC. In addition, 11 of the protein-coding genes used conservative termination codon TAA/TAG, except for COII and ND5 which terminated by a single T. Based on Bayesian (BI) and maximum-likelihood (ML) methods, we found that the genus Flavoperla and Niponiella were gathered into one branch and the species of Perlinae were clustered in one clade. |
format | Online Article Text |
id | pubmed-7748619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77486192020-12-22 The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) Hao, Caihao Wang, Guochang Li, Weihai Cao, Jinjun Mitochondrial DNA B Resour Mitogenome Announcement In this study, we analyzed the entire mitochondrial genome of Flavoperla hatakeyamae, which has 15,730 bp in length. This complete mitochondrial genome possessed 13 protein coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. The nucleotide composition of the complete sequence of mitochondrial genome was accounting for 35.0%, T for 31.3%, C for 21.2%, G for 12.5%, and A + T for 66.3%. Among the 13 protein-coding genes, the starting codon of 12 protein-coding genes was ATN except the starting codon of COII was ACC. In addition, 11 of the protein-coding genes used conservative termination codon TAA/TAG, except for COII and ND5 which terminated by a single T. Based on Bayesian (BI) and maximum-likelihood (ML) methods, we found that the genus Flavoperla and Niponiella were gathered into one branch and the species of Perlinae were clustered in one clade. Taylor & Francis 2020-02-03 /pmc/articles/PMC7748619/ /pubmed/33366857 http://dx.doi.org/10.1080/23802359.2020.1721350 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Hao, Caihao Wang, Guochang Li, Weihai Cao, Jinjun The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) |
title | The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) |
title_full | The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) |
title_fullStr | The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) |
title_full_unstemmed | The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) |
title_short | The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) |
title_sort | mitochondrial genome analysis of flavoperla hatakeyamae (plecoptera: perlidae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748619/ https://www.ncbi.nlm.nih.gov/pubmed/33366857 http://dx.doi.org/10.1080/23802359.2020.1721350 |
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