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The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)

In this study, we analyzed the entire mitochondrial genome of Flavoperla hatakeyamae, which has 15,730 bp in length. This complete mitochondrial genome possessed 13 protein coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. The nucleotide composition of the comp...

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Autores principales: Hao, Caihao, Wang, Guochang, Li, Weihai, Cao, Jinjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748619/
https://www.ncbi.nlm.nih.gov/pubmed/33366857
http://dx.doi.org/10.1080/23802359.2020.1721350
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author Hao, Caihao
Wang, Guochang
Li, Weihai
Cao, Jinjun
author_facet Hao, Caihao
Wang, Guochang
Li, Weihai
Cao, Jinjun
author_sort Hao, Caihao
collection PubMed
description In this study, we analyzed the entire mitochondrial genome of Flavoperla hatakeyamae, which has 15,730 bp in length. This complete mitochondrial genome possessed 13 protein coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. The nucleotide composition of the complete sequence of mitochondrial genome was accounting for 35.0%, T for 31.3%, C for 21.2%, G for 12.5%, and A + T for 66.3%. Among the 13 protein-coding genes, the starting codon of 12 protein-coding genes was ATN except the starting codon of COII was ACC. In addition, 11 of the protein-coding genes used conservative termination codon TAA/TAG, except for COII and ND5 which terminated by a single T. Based on Bayesian (BI) and maximum-likelihood (ML) methods, we found that the genus Flavoperla and Niponiella were gathered into one branch and the species of Perlinae were clustered in one clade.
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spelling pubmed-77486192020-12-22 The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae) Hao, Caihao Wang, Guochang Li, Weihai Cao, Jinjun Mitochondrial DNA B Resour Mitogenome Announcement In this study, we analyzed the entire mitochondrial genome of Flavoperla hatakeyamae, which has 15,730 bp in length. This complete mitochondrial genome possessed 13 protein coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. The nucleotide composition of the complete sequence of mitochondrial genome was accounting for 35.0%, T for 31.3%, C for 21.2%, G for 12.5%, and A + T for 66.3%. Among the 13 protein-coding genes, the starting codon of 12 protein-coding genes was ATN except the starting codon of COII was ACC. In addition, 11 of the protein-coding genes used conservative termination codon TAA/TAG, except for COII and ND5 which terminated by a single T. Based on Bayesian (BI) and maximum-likelihood (ML) methods, we found that the genus Flavoperla and Niponiella were gathered into one branch and the species of Perlinae were clustered in one clade. Taylor & Francis 2020-02-03 /pmc/articles/PMC7748619/ /pubmed/33366857 http://dx.doi.org/10.1080/23802359.2020.1721350 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Hao, Caihao
Wang, Guochang
Li, Weihai
Cao, Jinjun
The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)
title The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)
title_full The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)
title_fullStr The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)
title_full_unstemmed The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)
title_short The mitochondrial genome analysis of Flavoperla hatakeyamae (Plecoptera: Perlidae)
title_sort mitochondrial genome analysis of flavoperla hatakeyamae (plecoptera: perlidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748619/
https://www.ncbi.nlm.nih.gov/pubmed/33366857
http://dx.doi.org/10.1080/23802359.2020.1721350
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