The complete chloroplast genome sequence of Pterocarpus macrocarpus

The first complete chloroplast genome (cpDNA) sequence of Pterocarpus macrocarpus was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,734 bp in length, contains a large single copy region (LSC) of 88,418 bp and a small single copy region (SSC) of 18,790 bp, wh...

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Detalles Bibliográficos
Autores principales: Zhang, Jinfeng, Li, Yunqing, Yuan, Xiaolong, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748621/
https://www.ncbi.nlm.nih.gov/pubmed/33366718
http://dx.doi.org/10.1080/23802359.2020.1714509
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author Zhang, Jinfeng
Li, Yunqing
Yuan, Xiaolong
Wang, Yi
author_facet Zhang, Jinfeng
Li, Yunqing
Yuan, Xiaolong
Wang, Yi
author_sort Zhang, Jinfeng
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Pterocarpus macrocarpus was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,734 bp in length, contains a large single copy region (LSC) of 88,418 bp and a small single copy region (SSC) of 18,790 bp, which were separated by a pair of inverted repeats (IR) regions of 23,763 bp. The genome contains 127 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 36.3%, and the corresponding values of the LSC, SSC, and IR regions are 33.8%, 30.2%, and 43.3%, respectively. Further phylogenomic analysis showed that P. macrocarpus in Pterocarpus genus clade in Papilionoideae subfamily.
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spelling pubmed-77486212020-12-22 The complete chloroplast genome sequence of Pterocarpus macrocarpus Zhang, Jinfeng Li, Yunqing Yuan, Xiaolong Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Pterocarpus macrocarpus was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,734 bp in length, contains a large single copy region (LSC) of 88,418 bp and a small single copy region (SSC) of 18,790 bp, which were separated by a pair of inverted repeats (IR) regions of 23,763 bp. The genome contains 127 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 36.3%, and the corresponding values of the LSC, SSC, and IR regions are 33.8%, 30.2%, and 43.3%, respectively. Further phylogenomic analysis showed that P. macrocarpus in Pterocarpus genus clade in Papilionoideae subfamily. Taylor & Francis 2020-01-20 /pmc/articles/PMC7748621/ /pubmed/33366718 http://dx.doi.org/10.1080/23802359.2020.1714509 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Jinfeng
Li, Yunqing
Yuan, Xiaolong
Wang, Yi
The complete chloroplast genome sequence of Pterocarpus macrocarpus
title The complete chloroplast genome sequence of Pterocarpus macrocarpus
title_full The complete chloroplast genome sequence of Pterocarpus macrocarpus
title_fullStr The complete chloroplast genome sequence of Pterocarpus macrocarpus
title_full_unstemmed The complete chloroplast genome sequence of Pterocarpus macrocarpus
title_short The complete chloroplast genome sequence of Pterocarpus macrocarpus
title_sort complete chloroplast genome sequence of pterocarpus macrocarpus
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748621/
https://www.ncbi.nlm.nih.gov/pubmed/33366718
http://dx.doi.org/10.1080/23802359.2020.1714509
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