Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales)

Sarcandra glabra is a perennial evergreen subshrub, with high ornamental and medicinal value. Using the Illumina high-throughput sequencing data, its chloroplast genome is well assembled and characterized. The complete chloroplast genome is 158,872 bp in length with a typical quadripartite structure...

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Detalles Bibliográficos
Autores principales: Wang, Wei, Zou, Peishan, Liu, Guofeng, Dai, Seping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748631/
https://www.ncbi.nlm.nih.gov/pubmed/33366787
http://dx.doi.org/10.1080/23802359.2020.1715858
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author Wang, Wei
Zou, Peishan
Liu, Guofeng
Dai, Seping
author_facet Wang, Wei
Zou, Peishan
Liu, Guofeng
Dai, Seping
author_sort Wang, Wei
collection PubMed
description Sarcandra glabra is a perennial evergreen subshrub, with high ornamental and medicinal value. Using the Illumina high-throughput sequencing data, its chloroplast genome is well assembled and characterized. The complete chloroplast genome is 158,872 bp in length with a typical quadripartite structure: a pair of inverted repeats (IRs) of 26,122 bp for each, an 88,182 bp large single-copy (LSC) region and an 18,445 bp small single-copy (SSC) region. It was composed of 128 genes and they were identified 84 coding genes, 8 rRNA genes, 36 tRNA genes. Phylogenetic analysis confirmed that the position of S. glabra lay within the order Chloranthales instead of Piperales simply according to classical morphological taxonomy.
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spelling pubmed-77486312020-12-22 Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales) Wang, Wei Zou, Peishan Liu, Guofeng Dai, Seping Mitochondrial DNA B Resour Mitogenome Announcement Sarcandra glabra is a perennial evergreen subshrub, with high ornamental and medicinal value. Using the Illumina high-throughput sequencing data, its chloroplast genome is well assembled and characterized. The complete chloroplast genome is 158,872 bp in length with a typical quadripartite structure: a pair of inverted repeats (IRs) of 26,122 bp for each, an 88,182 bp large single-copy (LSC) region and an 18,445 bp small single-copy (SSC) region. It was composed of 128 genes and they were identified 84 coding genes, 8 rRNA genes, 36 tRNA genes. Phylogenetic analysis confirmed that the position of S. glabra lay within the order Chloranthales instead of Piperales simply according to classical morphological taxonomy. Taylor & Francis 2020-01-24 /pmc/articles/PMC7748631/ /pubmed/33366787 http://dx.doi.org/10.1080/23802359.2020.1715858 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Wei
Zou, Peishan
Liu, Guofeng
Dai, Seping
Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales)
title Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales)
title_full Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales)
title_fullStr Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales)
title_full_unstemmed Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales)
title_short Characterization of the complete chloroplast genome sequence of Sarcandra glabra (Chloranthales)
title_sort characterization of the complete chloroplast genome sequence of sarcandra glabra (chloranthales)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748631/
https://www.ncbi.nlm.nih.gov/pubmed/33366787
http://dx.doi.org/10.1080/23802359.2020.1715858
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