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Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae)

The complete chloroplast genome from Festuca sinensis, an important perennial bunchgrass of the Gramineae, is determined in this study. The whole chloroplast genome sequence of F. sinensis has been characterized by Illumina pair-end sequencing. The circular genome is 134,177 bp long, containing a la...

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Autores principales: Ding, Chengxiang, Dong, Quanmin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748645/
https://www.ncbi.nlm.nih.gov/pubmed/33366555
http://dx.doi.org/10.1080/23802359.2019.1704192
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author Ding, Chengxiang
Dong, Quanmin
author_facet Ding, Chengxiang
Dong, Quanmin
author_sort Ding, Chengxiang
collection PubMed
description The complete chloroplast genome from Festuca sinensis, an important perennial bunchgrass of the Gramineae, is determined in this study. The whole chloroplast genome sequence of F. sinensis has been characterized by Illumina pair-end sequencing. The circular genome is 134,177 bp long, containing a large single-copy region (LSC) of 79,367 bp and a small single-copy region (SSC) of 12,510 bp, which are separated by a pair of 21,150 bp inverted repeat regions (IRs). It encodes a total of 150 genes, including 93 protein-coding genes (75 PCG species), 49 tRNA genes (30 tRNA species) and eight ribosomal RNA genes (4 rRNA species). The most of gene species occur as a single copy, while 30 gene species occur in double copies. The overall A + T content of is 61.6%, while the corresponding values of the LSC, SSC, and IR regions are 63.7, 67.4, and 56.0%, respectively. Phylogenetic analysis suggested that Festuca sinensis was relatively close to Festuca ovina compared with other species of Festuca genera in Gramineae among the species analyzed. This complete chloroplast genome will provide valuable insight into conservation and exploitation efforts for this species as well as useful resources for studying the Gramineae phylogeny.
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spelling pubmed-77486452020-12-22 Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae) Ding, Chengxiang Dong, Quanmin Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome from Festuca sinensis, an important perennial bunchgrass of the Gramineae, is determined in this study. The whole chloroplast genome sequence of F. sinensis has been characterized by Illumina pair-end sequencing. The circular genome is 134,177 bp long, containing a large single-copy region (LSC) of 79,367 bp and a small single-copy region (SSC) of 12,510 bp, which are separated by a pair of 21,150 bp inverted repeat regions (IRs). It encodes a total of 150 genes, including 93 protein-coding genes (75 PCG species), 49 tRNA genes (30 tRNA species) and eight ribosomal RNA genes (4 rRNA species). The most of gene species occur as a single copy, while 30 gene species occur in double copies. The overall A + T content of is 61.6%, while the corresponding values of the LSC, SSC, and IR regions are 63.7, 67.4, and 56.0%, respectively. Phylogenetic analysis suggested that Festuca sinensis was relatively close to Festuca ovina compared with other species of Festuca genera in Gramineae among the species analyzed. This complete chloroplast genome will provide valuable insight into conservation and exploitation efforts for this species as well as useful resources for studying the Gramineae phylogeny. Taylor & Francis 2019-12-27 /pmc/articles/PMC7748645/ /pubmed/33366555 http://dx.doi.org/10.1080/23802359.2019.1704192 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ding, Chengxiang
Dong, Quanmin
Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae)
title Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae)
title_full Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae)
title_fullStr Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae)
title_full_unstemmed Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae)
title_short Characterization of the complete chloroplast genome of Festuca sinensis (Gramineae)
title_sort characterization of the complete chloroplast genome of festuca sinensis (gramineae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748645/
https://www.ncbi.nlm.nih.gov/pubmed/33366555
http://dx.doi.org/10.1080/23802359.2019.1704192
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