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The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)

Ulmus elongata is a species of Sect. Chaetoptelea (Liemb.) S chneid in Ulmaceae, and it is an endangered wild plant listed in the second class of the Protected Plants in China. The complete chloroplast genome (cp) of U. elongata was reported in this study. The result showed that the cp genome was 15...

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Autores principales: Yinran, Huang, Xiaoxu, Huang, Shuxiang, Feng, Shufang, Yan, Yongtan, Li, Yichao, Liu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748663/
https://www.ncbi.nlm.nih.gov/pubmed/33366753
http://dx.doi.org/10.1080/23802359.2020.1715280
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author Yinran, Huang
Xiaoxu, Huang
Shuxiang, Feng
Shufang, Yan
Yongtan, Li
Yichao, Liu
author_facet Yinran, Huang
Xiaoxu, Huang
Shuxiang, Feng
Shufang, Yan
Yongtan, Li
Yichao, Liu
author_sort Yinran, Huang
collection PubMed
description Ulmus elongata is a species of Sect. Chaetoptelea (Liemb.) S chneid in Ulmaceae, and it is an endangered wild plant listed in the second class of the Protected Plants in China. The complete chloroplast genome (cp) of U. elongata was reported in this study. The result showed that the cp genome was 159,230 bp in length including a large single-copy (LSC) 87,718 bp and a small single-copy (SSC) 18,690 bp, which were separated by two inverted repeats (IRs) of 26,411 bp with the typical quadripartite structure, respectively. The genome encoded 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The GC content was 35.57%. Chloroplast sequences were used for constructing phylogenetic tree to determine the evolutionary status of U. elongata. The maximum-likelihood phylogenetic analysis showed that U. elongata was clustered with five other Ulmus species, and the relationship between Ulmus and Zelkova was closest. The success of cp genome assembly of U. elongata has laid a foundation for the study of chloroplast molecular biology and can effectively promote the study of genetic breeding and molecular evolution of U. elongata.
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spelling pubmed-77486632020-12-22 The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) Yinran, Huang Xiaoxu, Huang Shuxiang, Feng Shufang, Yan Yongtan, Li Yichao, Liu Mitochondrial DNA B Resour Mitogenome Announcement Ulmus elongata is a species of Sect. Chaetoptelea (Liemb.) S chneid in Ulmaceae, and it is an endangered wild plant listed in the second class of the Protected Plants in China. The complete chloroplast genome (cp) of U. elongata was reported in this study. The result showed that the cp genome was 159,230 bp in length including a large single-copy (LSC) 87,718 bp and a small single-copy (SSC) 18,690 bp, which were separated by two inverted repeats (IRs) of 26,411 bp with the typical quadripartite structure, respectively. The genome encoded 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The GC content was 35.57%. Chloroplast sequences were used for constructing phylogenetic tree to determine the evolutionary status of U. elongata. The maximum-likelihood phylogenetic analysis showed that U. elongata was clustered with five other Ulmus species, and the relationship between Ulmus and Zelkova was closest. The success of cp genome assembly of U. elongata has laid a foundation for the study of chloroplast molecular biology and can effectively promote the study of genetic breeding and molecular evolution of U. elongata. Taylor & Francis 2020-01-24 /pmc/articles/PMC7748663/ /pubmed/33366753 http://dx.doi.org/10.1080/23802359.2020.1715280 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yinran, Huang
Xiaoxu, Huang
Shuxiang, Feng
Shufang, Yan
Yongtan, Li
Yichao, Liu
The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)
title The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)
title_full The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)
title_fullStr The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)
title_full_unstemmed The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)
title_short The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)
title_sort complete chloroplast genome sequence of ulmus elongata (ulmaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748663/
https://www.ncbi.nlm.nih.gov/pubmed/33366753
http://dx.doi.org/10.1080/23802359.2020.1715280
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