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The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae)
Ulmus elongata is a species of Sect. Chaetoptelea (Liemb.) S chneid in Ulmaceae, and it is an endangered wild plant listed in the second class of the Protected Plants in China. The complete chloroplast genome (cp) of U. elongata was reported in this study. The result showed that the cp genome was 15...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748663/ https://www.ncbi.nlm.nih.gov/pubmed/33366753 http://dx.doi.org/10.1080/23802359.2020.1715280 |
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author | Yinran, Huang Xiaoxu, Huang Shuxiang, Feng Shufang, Yan Yongtan, Li Yichao, Liu |
author_facet | Yinran, Huang Xiaoxu, Huang Shuxiang, Feng Shufang, Yan Yongtan, Li Yichao, Liu |
author_sort | Yinran, Huang |
collection | PubMed |
description | Ulmus elongata is a species of Sect. Chaetoptelea (Liemb.) S chneid in Ulmaceae, and it is an endangered wild plant listed in the second class of the Protected Plants in China. The complete chloroplast genome (cp) of U. elongata was reported in this study. The result showed that the cp genome was 159,230 bp in length including a large single-copy (LSC) 87,718 bp and a small single-copy (SSC) 18,690 bp, which were separated by two inverted repeats (IRs) of 26,411 bp with the typical quadripartite structure, respectively. The genome encoded 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The GC content was 35.57%. Chloroplast sequences were used for constructing phylogenetic tree to determine the evolutionary status of U. elongata. The maximum-likelihood phylogenetic analysis showed that U. elongata was clustered with five other Ulmus species, and the relationship between Ulmus and Zelkova was closest. The success of cp genome assembly of U. elongata has laid a foundation for the study of chloroplast molecular biology and can effectively promote the study of genetic breeding and molecular evolution of U. elongata. |
format | Online Article Text |
id | pubmed-7748663 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77486632020-12-22 The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) Yinran, Huang Xiaoxu, Huang Shuxiang, Feng Shufang, Yan Yongtan, Li Yichao, Liu Mitochondrial DNA B Resour Mitogenome Announcement Ulmus elongata is a species of Sect. Chaetoptelea (Liemb.) S chneid in Ulmaceae, and it is an endangered wild plant listed in the second class of the Protected Plants in China. The complete chloroplast genome (cp) of U. elongata was reported in this study. The result showed that the cp genome was 159,230 bp in length including a large single-copy (LSC) 87,718 bp and a small single-copy (SSC) 18,690 bp, which were separated by two inverted repeats (IRs) of 26,411 bp with the typical quadripartite structure, respectively. The genome encoded 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The GC content was 35.57%. Chloroplast sequences were used for constructing phylogenetic tree to determine the evolutionary status of U. elongata. The maximum-likelihood phylogenetic analysis showed that U. elongata was clustered with five other Ulmus species, and the relationship between Ulmus and Zelkova was closest. The success of cp genome assembly of U. elongata has laid a foundation for the study of chloroplast molecular biology and can effectively promote the study of genetic breeding and molecular evolution of U. elongata. Taylor & Francis 2020-01-24 /pmc/articles/PMC7748663/ /pubmed/33366753 http://dx.doi.org/10.1080/23802359.2020.1715280 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yinran, Huang Xiaoxu, Huang Shuxiang, Feng Shufang, Yan Yongtan, Li Yichao, Liu The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) |
title | The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) |
title_full | The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) |
title_fullStr | The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) |
title_short | The complete chloroplast genome sequence of Ulmus elongata (Ulmaceae) |
title_sort | complete chloroplast genome sequence of ulmus elongata (ulmaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748663/ https://www.ncbi.nlm.nih.gov/pubmed/33366753 http://dx.doi.org/10.1080/23802359.2020.1715280 |
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