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The complete chloroplast genome of a Woodwardia japonica
Woodwardia japonica is one of the diverse members of the fern group and medicinally important genus. In Korea, the natural resources of W. japonica are being exhausted by excessive exploitation and require urgent conservation. In this study, the complete chloroplast genome of W. japonica was generat...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748671/ https://www.ncbi.nlm.nih.gov/pubmed/33366442 http://dx.doi.org/10.1080/23802359.2019.1698366 |
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author | Ramekar, Rahul Vasudeo Choi, Ik-Young Cheong, Eun Ju Kwak, Myounghai Park, Kyong-Cheul |
author_facet | Ramekar, Rahul Vasudeo Choi, Ik-Young Cheong, Eun Ju Kwak, Myounghai Park, Kyong-Cheul |
author_sort | Ramekar, Rahul Vasudeo |
collection | PubMed |
description | Woodwardia japonica is one of the diverse members of the fern group and medicinally important genus. In Korea, the natural resources of W. japonica are being exhausted by excessive exploitation and require urgent conservation. In this study, the complete chloroplast genome of W. japonica was generated, and its structure was compared with that of other members of same family. The chloroplast genome was 153224 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (24591 bp) separated by a large (82480 bp) and small (21562 bp) single-copy (SC) region. The genome encodes a total of 88 protein-coding genes, 35 tRNA genes, and eight rRNA genes. Additionally we identified 87 RNA editing sites in 52 genes; most of the substitution was U to C (50 sites), while C to U conversion occurred in 37 positions. The phylogenetic analysis strongly supported the relationship of W. japonica with W. unigemmata and. A. melanocaulon (Blechnoideae). |
format | Online Article Text |
id | pubmed-7748671 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77486712020-12-22 The complete chloroplast genome of a Woodwardia japonica Ramekar, Rahul Vasudeo Choi, Ik-Young Cheong, Eun Ju Kwak, Myounghai Park, Kyong-Cheul Mitochondrial DNA B Resour Mitogenome Announcements Woodwardia japonica is one of the diverse members of the fern group and medicinally important genus. In Korea, the natural resources of W. japonica are being exhausted by excessive exploitation and require urgent conservation. In this study, the complete chloroplast genome of W. japonica was generated, and its structure was compared with that of other members of same family. The chloroplast genome was 153224 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (24591 bp) separated by a large (82480 bp) and small (21562 bp) single-copy (SC) region. The genome encodes a total of 88 protein-coding genes, 35 tRNA genes, and eight rRNA genes. Additionally we identified 87 RNA editing sites in 52 genes; most of the substitution was U to C (50 sites), while C to U conversion occurred in 37 positions. The phylogenetic analysis strongly supported the relationship of W. japonica with W. unigemmata and. A. melanocaulon (Blechnoideae). Taylor & Francis 2019-12-11 /pmc/articles/PMC7748671/ /pubmed/33366442 http://dx.doi.org/10.1080/23802359.2019.1698366 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcements Ramekar, Rahul Vasudeo Choi, Ik-Young Cheong, Eun Ju Kwak, Myounghai Park, Kyong-Cheul The complete chloroplast genome of a Woodwardia japonica |
title | The complete chloroplast genome of a Woodwardia japonica |
title_full | The complete chloroplast genome of a Woodwardia japonica |
title_fullStr | The complete chloroplast genome of a Woodwardia japonica |
title_full_unstemmed | The complete chloroplast genome of a Woodwardia japonica |
title_short | The complete chloroplast genome of a Woodwardia japonica |
title_sort | complete chloroplast genome of a woodwardia japonica |
topic | Mitogenome Announcements |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748671/ https://www.ncbi.nlm.nih.gov/pubmed/33366442 http://dx.doi.org/10.1080/23802359.2019.1698366 |
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