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The complete chloroplast genome of a Woodwardia japonica

Woodwardia japonica is one of the diverse members of the fern group and medicinally important genus. In Korea, the natural resources of W. japonica are being exhausted by excessive exploitation and require urgent conservation. In this study, the complete chloroplast genome of W. japonica was generat...

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Autores principales: Ramekar, Rahul Vasudeo, Choi, Ik-Young, Cheong, Eun Ju, Kwak, Myounghai, Park, Kyong-Cheul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748671/
https://www.ncbi.nlm.nih.gov/pubmed/33366442
http://dx.doi.org/10.1080/23802359.2019.1698366
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author Ramekar, Rahul Vasudeo
Choi, Ik-Young
Cheong, Eun Ju
Kwak, Myounghai
Park, Kyong-Cheul
author_facet Ramekar, Rahul Vasudeo
Choi, Ik-Young
Cheong, Eun Ju
Kwak, Myounghai
Park, Kyong-Cheul
author_sort Ramekar, Rahul Vasudeo
collection PubMed
description Woodwardia japonica is one of the diverse members of the fern group and medicinally important genus. In Korea, the natural resources of W. japonica are being exhausted by excessive exploitation and require urgent conservation. In this study, the complete chloroplast genome of W. japonica was generated, and its structure was compared with that of other members of same family. The chloroplast genome was 153224 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (24591 bp) separated by a large (82480 bp) and small (21562 bp) single-copy (SC) region. The genome encodes a total of 88 protein-coding genes, 35 tRNA genes, and eight rRNA genes. Additionally we identified 87 RNA editing sites in 52 genes; most of the substitution was U to C (50 sites), while C to U conversion occurred in 37 positions. The phylogenetic analysis strongly supported the relationship of W. japonica with W. unigemmata and. A. melanocaulon (Blechnoideae).
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spelling pubmed-77486712020-12-22 The complete chloroplast genome of a Woodwardia japonica Ramekar, Rahul Vasudeo Choi, Ik-Young Cheong, Eun Ju Kwak, Myounghai Park, Kyong-Cheul Mitochondrial DNA B Resour Mitogenome Announcements Woodwardia japonica is one of the diverse members of the fern group and medicinally important genus. In Korea, the natural resources of W. japonica are being exhausted by excessive exploitation and require urgent conservation. In this study, the complete chloroplast genome of W. japonica was generated, and its structure was compared with that of other members of same family. The chloroplast genome was 153224 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (24591 bp) separated by a large (82480 bp) and small (21562 bp) single-copy (SC) region. The genome encodes a total of 88 protein-coding genes, 35 tRNA genes, and eight rRNA genes. Additionally we identified 87 RNA editing sites in 52 genes; most of the substitution was U to C (50 sites), while C to U conversion occurred in 37 positions. The phylogenetic analysis strongly supported the relationship of W. japonica with W. unigemmata and. A. melanocaulon (Blechnoideae). Taylor & Francis 2019-12-11 /pmc/articles/PMC7748671/ /pubmed/33366442 http://dx.doi.org/10.1080/23802359.2019.1698366 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcements
Ramekar, Rahul Vasudeo
Choi, Ik-Young
Cheong, Eun Ju
Kwak, Myounghai
Park, Kyong-Cheul
The complete chloroplast genome of a Woodwardia japonica
title The complete chloroplast genome of a Woodwardia japonica
title_full The complete chloroplast genome of a Woodwardia japonica
title_fullStr The complete chloroplast genome of a Woodwardia japonica
title_full_unstemmed The complete chloroplast genome of a Woodwardia japonica
title_short The complete chloroplast genome of a Woodwardia japonica
title_sort complete chloroplast genome of a woodwardia japonica
topic Mitogenome Announcements
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748671/
https://www.ncbi.nlm.nih.gov/pubmed/33366442
http://dx.doi.org/10.1080/23802359.2019.1698366
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