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The complete chloroplast genome sequence of Populus koreana (Salicaceae)
The complete chloroplast genome sequence of Populus koreana was characterized using Illumina pair-end sequencing. The chloroplast genome of P. koreana was 156,868 bp in length, containing a large single-copy region (LSC) of 84,976 bp, a small single-copy region (SSC) of 16,606 bp, and two inverted r...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748676/ https://www.ncbi.nlm.nih.gov/pubmed/33366754 http://dx.doi.org/10.1080/23802359.2020.1715291 |
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author | Ang, Li Zhe, Hou |
author_facet | Ang, Li Zhe, Hou |
author_sort | Ang, Li |
collection | PubMed |
description | The complete chloroplast genome sequence of Populus koreana was characterized using Illumina pair-end sequencing. The chloroplast genome of P. koreana was 156,868 bp in length, containing a large single-copy region (LSC) of 84,976 bp, a small single-copy region (SSC) of 16,606 bp, and two inverted repeat (IR) regions of 27,643 bp. The overall GC content is 30.70%, whereas the corresponding values of the LSC, SSC, and IR regions are 64.6%, 69.2%, and 60.1%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species), and eight rRNA genes (four rRNA species). The neighbour-joining phylogenetic analysis showed that P. koreana and Populus fremontii clustered together as sisters to other Populus species. |
format | Online Article Text |
id | pubmed-7748676 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77486762020-12-22 The complete chloroplast genome sequence of Populus koreana (Salicaceae) Ang, Li Zhe, Hou Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Populus koreana was characterized using Illumina pair-end sequencing. The chloroplast genome of P. koreana was 156,868 bp in length, containing a large single-copy region (LSC) of 84,976 bp, a small single-copy region (SSC) of 16,606 bp, and two inverted repeat (IR) regions of 27,643 bp. The overall GC content is 30.70%, whereas the corresponding values of the LSC, SSC, and IR regions are 64.6%, 69.2%, and 60.1%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species), and eight rRNA genes (four rRNA species). The neighbour-joining phylogenetic analysis showed that P. koreana and Populus fremontii clustered together as sisters to other Populus species. Taylor & Francis 2020-01-24 /pmc/articles/PMC7748676/ /pubmed/33366754 http://dx.doi.org/10.1080/23802359.2020.1715291 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ang, Li Zhe, Hou The complete chloroplast genome sequence of Populus koreana (Salicaceae) |
title | The complete chloroplast genome sequence of Populus koreana (Salicaceae) |
title_full | The complete chloroplast genome sequence of Populus koreana (Salicaceae) |
title_fullStr | The complete chloroplast genome sequence of Populus koreana (Salicaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Populus koreana (Salicaceae) |
title_short | The complete chloroplast genome sequence of Populus koreana (Salicaceae) |
title_sort | complete chloroplast genome sequence of populus koreana (salicaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748676/ https://www.ncbi.nlm.nih.gov/pubmed/33366754 http://dx.doi.org/10.1080/23802359.2020.1715291 |
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