Characterization of the complete chloroplast genome of Calophaca sinica Rehd.

Calophaca sinica Rehd. is a tree species with high economic value, whose resource has been declining due to unreasonable exploitation. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of C. sinica. The whole chloroplast genome size is 129,345 bp, it lacks an inve...

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Autores principales: Guo, Bin, Zheng, Zhi-Li, Gao, Kai, Ma, Jia-Lin, Wang, Jian-Yi, Yang, Fei, An, Xin-Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748687/
https://www.ncbi.nlm.nih.gov/pubmed/33366671
http://dx.doi.org/10.1080/23802359.2019.1710608
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author Guo, Bin
Zheng, Zhi-Li
Gao, Kai
Ma, Jia-Lin
Wang, Jian-Yi
Yang, Fei
An, Xin-Min
author_facet Guo, Bin
Zheng, Zhi-Li
Gao, Kai
Ma, Jia-Lin
Wang, Jian-Yi
Yang, Fei
An, Xin-Min
author_sort Guo, Bin
collection PubMed
description Calophaca sinica Rehd. is a tree species with high economic value, whose resource has been declining due to unreasonable exploitation. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of C. sinica. The whole chloroplast genome size is 129,345 bp, it lacks an inverted repeat (IR) region. The GC content of the whole chloroplast genome is 34.51%. The chloroplast genome comprises 112 unique genes, including 77 protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and 5 ribosomal RNA (rRNA) genes. Phylogenetic analyses of chloroplast genomes derived from 15 species indicated that C. sinica is close to Caragana and Tibetia species in Papilionoideae.
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spelling pubmed-77486872020-12-22 Characterization of the complete chloroplast genome of Calophaca sinica Rehd. Guo, Bin Zheng, Zhi-Li Gao, Kai Ma, Jia-Lin Wang, Jian-Yi Yang, Fei An, Xin-Min Mitochondrial DNA B Resour Mitogenome Announcement Calophaca sinica Rehd. is a tree species with high economic value, whose resource has been declining due to unreasonable exploitation. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of C. sinica. The whole chloroplast genome size is 129,345 bp, it lacks an inverted repeat (IR) region. The GC content of the whole chloroplast genome is 34.51%. The chloroplast genome comprises 112 unique genes, including 77 protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and 5 ribosomal RNA (rRNA) genes. Phylogenetic analyses of chloroplast genomes derived from 15 species indicated that C. sinica is close to Caragana and Tibetia species in Papilionoideae. Taylor & Francis 2020-01-14 /pmc/articles/PMC7748687/ /pubmed/33366671 http://dx.doi.org/10.1080/23802359.2019.1710608 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Guo, Bin
Zheng, Zhi-Li
Gao, Kai
Ma, Jia-Lin
Wang, Jian-Yi
Yang, Fei
An, Xin-Min
Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
title Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
title_full Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
title_fullStr Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
title_full_unstemmed Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
title_short Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
title_sort characterization of the complete chloroplast genome of calophaca sinica rehd.
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748687/
https://www.ncbi.nlm.nih.gov/pubmed/33366671
http://dx.doi.org/10.1080/23802359.2019.1710608
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