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The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’
Populus deltoides ‘Siyang-2’ is an improved variety of forest trees that have been identified recently. It shows superior growth performance compared to other local cultivars in the region of Yangtze-Huaihe in China. In this study, the whole chloroplast (cp) genome sequence of ‘Siyang-2’ was assembl...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748702/ https://www.ncbi.nlm.nih.gov/pubmed/33366521 http://dx.doi.org/10.1080/23802359.2019.1700840 |
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author | Su, Tao Han, Mei Min, Jie Cao, Dan Pan, Huixin Liu, Yuxin |
author_facet | Su, Tao Han, Mei Min, Jie Cao, Dan Pan, Huixin Liu, Yuxin |
author_sort | Su, Tao |
collection | PubMed |
description | Populus deltoides ‘Siyang-2’ is an improved variety of forest trees that have been identified recently. It shows superior growth performance compared to other local cultivars in the region of Yangtze-Huaihe in China. In this study, the whole chloroplast (cp) genome sequence of ‘Siyang-2’ was assembled and characterized by high-throughput sequencing data. The complete cp genome was 156,957 bp in length, containing a large single-copy region (LSC) of 85,096 bp, and a small single-copy region (SSC) of 16,563 bp, which were separated by a pair of 27,649 bp inverted repeat regions (IRs). The cp genome contained 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. Most of the gene species occur as a single copy, while 20 gene species occur in double copies. The overall GC content of ‘Siyang-2’ cp genome is 34.6%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.6%, 41.9%, respectively. The complete cp genome provides valuable phylogenetic and cp genetic engineering studies of this important improved poplar species P. deltoides ‘Siyang-2’. |
format | Online Article Text |
id | pubmed-7748702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77487022020-12-22 The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ Su, Tao Han, Mei Min, Jie Cao, Dan Pan, Huixin Liu, Yuxin Mitochondrial DNA B Resour Mitogenome Announcement Populus deltoides ‘Siyang-2’ is an improved variety of forest trees that have been identified recently. It shows superior growth performance compared to other local cultivars in the region of Yangtze-Huaihe in China. In this study, the whole chloroplast (cp) genome sequence of ‘Siyang-2’ was assembled and characterized by high-throughput sequencing data. The complete cp genome was 156,957 bp in length, containing a large single-copy region (LSC) of 85,096 bp, and a small single-copy region (SSC) of 16,563 bp, which were separated by a pair of 27,649 bp inverted repeat regions (IRs). The cp genome contained 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. Most of the gene species occur as a single copy, while 20 gene species occur in double copies. The overall GC content of ‘Siyang-2’ cp genome is 34.6%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.6%, 41.9%, respectively. The complete cp genome provides valuable phylogenetic and cp genetic engineering studies of this important improved poplar species P. deltoides ‘Siyang-2’. Taylor & Francis 2019-12-13 /pmc/articles/PMC7748702/ /pubmed/33366521 http://dx.doi.org/10.1080/23802359.2019.1700840 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Su, Tao Han, Mei Min, Jie Cao, Dan Pan, Huixin Liu, Yuxin The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ |
title | The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ |
title_full | The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ |
title_fullStr | The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ |
title_full_unstemmed | The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ |
title_short | The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ |
title_sort | complete chloroplast genome sequence of populus deltoides ‘siyang-2’ |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748702/ https://www.ncbi.nlm.nih.gov/pubmed/33366521 http://dx.doi.org/10.1080/23802359.2019.1700840 |
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