Cargando…

The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’

Populus deltoides ‘Siyang-2’ is an improved variety of forest trees that have been identified recently. It shows superior growth performance compared to other local cultivars in the region of Yangtze-Huaihe in China. In this study, the whole chloroplast (cp) genome sequence of ‘Siyang-2’ was assembl...

Descripción completa

Detalles Bibliográficos
Autores principales: Su, Tao, Han, Mei, Min, Jie, Cao, Dan, Pan, Huixin, Liu, Yuxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748702/
https://www.ncbi.nlm.nih.gov/pubmed/33366521
http://dx.doi.org/10.1080/23802359.2019.1700840
_version_ 1783625172762230784
author Su, Tao
Han, Mei
Min, Jie
Cao, Dan
Pan, Huixin
Liu, Yuxin
author_facet Su, Tao
Han, Mei
Min, Jie
Cao, Dan
Pan, Huixin
Liu, Yuxin
author_sort Su, Tao
collection PubMed
description Populus deltoides ‘Siyang-2’ is an improved variety of forest trees that have been identified recently. It shows superior growth performance compared to other local cultivars in the region of Yangtze-Huaihe in China. In this study, the whole chloroplast (cp) genome sequence of ‘Siyang-2’ was assembled and characterized by high-throughput sequencing data. The complete cp genome was 156,957 bp in length, containing a large single-copy region (LSC) of 85,096 bp, and a small single-copy region (SSC) of 16,563 bp, which were separated by a pair of 27,649 bp inverted repeat regions (IRs). The cp genome contained 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. Most of the gene species occur as a single copy, while 20 gene species occur in double copies. The overall GC content of ‘Siyang-2’ cp genome is 34.6%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.6%, 41.9%, respectively. The complete cp genome provides valuable phylogenetic and cp genetic engineering studies of this important improved poplar species P. deltoides ‘Siyang-2’.
format Online
Article
Text
id pubmed-7748702
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77487022020-12-22 The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’ Su, Tao Han, Mei Min, Jie Cao, Dan Pan, Huixin Liu, Yuxin Mitochondrial DNA B Resour Mitogenome Announcement Populus deltoides ‘Siyang-2’ is an improved variety of forest trees that have been identified recently. It shows superior growth performance compared to other local cultivars in the region of Yangtze-Huaihe in China. In this study, the whole chloroplast (cp) genome sequence of ‘Siyang-2’ was assembled and characterized by high-throughput sequencing data. The complete cp genome was 156,957 bp in length, containing a large single-copy region (LSC) of 85,096 bp, and a small single-copy region (SSC) of 16,563 bp, which were separated by a pair of 27,649 bp inverted repeat regions (IRs). The cp genome contained 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. Most of the gene species occur as a single copy, while 20 gene species occur in double copies. The overall GC content of ‘Siyang-2’ cp genome is 34.6%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.6%, 41.9%, respectively. The complete cp genome provides valuable phylogenetic and cp genetic engineering studies of this important improved poplar species P. deltoides ‘Siyang-2’. Taylor & Francis 2019-12-13 /pmc/articles/PMC7748702/ /pubmed/33366521 http://dx.doi.org/10.1080/23802359.2019.1700840 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Su, Tao
Han, Mei
Min, Jie
Cao, Dan
Pan, Huixin
Liu, Yuxin
The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’
title The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’
title_full The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’
title_fullStr The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’
title_full_unstemmed The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’
title_short The complete chloroplast genome sequence of Populus deltoides ‘Siyang-2’
title_sort complete chloroplast genome sequence of populus deltoides ‘siyang-2’
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748702/
https://www.ncbi.nlm.nih.gov/pubmed/33366521
http://dx.doi.org/10.1080/23802359.2019.1700840
work_keys_str_mv AT sutao thecompletechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT hanmei thecompletechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT minjie thecompletechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT caodan thecompletechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT panhuixin thecompletechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT liuyuxin thecompletechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT sutao completechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT hanmei completechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT minjie completechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT caodan completechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT panhuixin completechloroplastgenomesequenceofpopulusdeltoidessiyang2
AT liuyuxin completechloroplastgenomesequenceofpopulusdeltoidessiyang2