Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)

Prunus jamasakura is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of Prunus jamasakura using genome skimming approach. The cp genome was 157,905 bp long, with a large single-copy region (LSC) of 85,910 bp and a small single-copy region (SSC) of 19,1...

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Autores principales: Yi, Xian-Gui, Chen, Jie, Li, Meng, Zhu, Hong, Sun, Zhong-Shuai, Katsuki, Toshio, Wang, Xian-Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748705/
https://www.ncbi.nlm.nih.gov/pubmed/33366524
http://dx.doi.org/10.1080/23802359.2019.1699463
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author Yi, Xian-Gui
Chen, Jie
Li, Meng
Zhu, Hong
Sun, Zhong-Shuai
Katsuki, Toshio
Wang, Xian-Rong
author_facet Yi, Xian-Gui
Chen, Jie
Li, Meng
Zhu, Hong
Sun, Zhong-Shuai
Katsuki, Toshio
Wang, Xian-Rong
author_sort Yi, Xian-Gui
collection PubMed
description Prunus jamasakura is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of Prunus jamasakura using genome skimming approach. The cp genome was 157,905 bp long, with a large single-copy region (LSC) of 85,910 bp and a small single-copy region (SSC) of 19,123 bp separated by a pair of inverted repeats (IRs) of 26,436 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. jamasakura is closely related with Prunus speciosa.
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spelling pubmed-77487052020-12-22 Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae) Yi, Xian-Gui Chen, Jie Li, Meng Zhu, Hong Sun, Zhong-Shuai Katsuki, Toshio Wang, Xian-Rong Mitochondrial DNA B Resour Mitogenome Announcement Prunus jamasakura is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of Prunus jamasakura using genome skimming approach. The cp genome was 157,905 bp long, with a large single-copy region (LSC) of 85,910 bp and a small single-copy region (SSC) of 19,123 bp separated by a pair of inverted repeats (IRs) of 26,436 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. jamasakura is closely related with Prunus speciosa. Taylor & Francis 2019-12-13 /pmc/articles/PMC7748705/ /pubmed/33366524 http://dx.doi.org/10.1080/23802359.2019.1699463 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yi, Xian-Gui
Chen, Jie
Li, Meng
Zhu, Hong
Sun, Zhong-Shuai
Katsuki, Toshio
Wang, Xian-Rong
Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)
title Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)
title_full Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)
title_fullStr Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)
title_full_unstemmed Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)
title_short Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)
title_sort complete chloroplast genome of the wild japanese mountain cherry (prunus jamasakura, rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748705/
https://www.ncbi.nlm.nih.gov/pubmed/33366524
http://dx.doi.org/10.1080/23802359.2019.1699463
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