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Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China
The Asian Glass Lizard, Dopasia gracillis, has wide distribution in North India, Nepal, South China, and Indochina. In this study, a complete mitochondrial genome of D. gracillis from the Yungui Plateau in Southwest China was determined by next-generation sequencing. Similar to the typical mtDNA of...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748712/ https://www.ncbi.nlm.nih.gov/pubmed/33366842 http://dx.doi.org/10.1080/23802359.2020.1720537 |
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author | Cai, Bo Guo, Xianguang Jiang, Jianping |
author_facet | Cai, Bo Guo, Xianguang Jiang, Jianping |
author_sort | Cai, Bo |
collection | PubMed |
description | The Asian Glass Lizard, Dopasia gracillis, has wide distribution in North India, Nepal, South China, and Indochina. In this study, a complete mitochondrial genome of D. gracillis from the Yungui Plateau in Southwest China was determined by next-generation sequencing. Similar to the typical mtDNA of vertebrates, the mitogenome was 17,133 bp in length and comprised the standard set of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 1 control region. The concatenated PCGs were used to conduct Bayesian phylogenetic analyses together with mitogenome data of Anguidae and related taxa in GenBank. The resulting phylogenetic tree confirmed the monophyly of Anguidae and Aguinae as well as D. gracillis, respectively. The mitogenome reported here will contribute to the examination of phylogeographic structure for D. gracillis and understanding of mitochondrial DNA evolution in Anguidae. |
format | Online Article Text |
id | pubmed-7748712 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77487122020-12-22 Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China Cai, Bo Guo, Xianguang Jiang, Jianping Mitochondrial DNA B Resour Mitogenome Announcement The Asian Glass Lizard, Dopasia gracillis, has wide distribution in North India, Nepal, South China, and Indochina. In this study, a complete mitochondrial genome of D. gracillis from the Yungui Plateau in Southwest China was determined by next-generation sequencing. Similar to the typical mtDNA of vertebrates, the mitogenome was 17,133 bp in length and comprised the standard set of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 1 control region. The concatenated PCGs were used to conduct Bayesian phylogenetic analyses together with mitogenome data of Anguidae and related taxa in GenBank. The resulting phylogenetic tree confirmed the monophyly of Anguidae and Aguinae as well as D. gracillis, respectively. The mitogenome reported here will contribute to the examination of phylogeographic structure for D. gracillis and understanding of mitochondrial DNA evolution in Anguidae. Taylor & Francis 2020-02-03 /pmc/articles/PMC7748712/ /pubmed/33366842 http://dx.doi.org/10.1080/23802359.2020.1720537 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Cai, Bo Guo, Xianguang Jiang, Jianping Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China |
title | Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China |
title_full | Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China |
title_fullStr | Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China |
title_full_unstemmed | Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China |
title_short | Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China |
title_sort | next-generation sequencing yields a complete mitochondrial genome of the asian glass lizard (dopasia gracillis) from the yungui plateau in southwest china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748712/ https://www.ncbi.nlm.nih.gov/pubmed/33366842 http://dx.doi.org/10.1080/23802359.2020.1720537 |
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