Cargando…

Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China

The Asian Glass Lizard, Dopasia gracillis, has wide distribution in North India, Nepal, South China, and Indochina. In this study, a complete mitochondrial genome of D. gracillis from the Yungui Plateau in Southwest China was determined by next-generation sequencing. Similar to the typical mtDNA of...

Descripción completa

Detalles Bibliográficos
Autores principales: Cai, Bo, Guo, Xianguang, Jiang, Jianping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748712/
https://www.ncbi.nlm.nih.gov/pubmed/33366842
http://dx.doi.org/10.1080/23802359.2020.1720537
_version_ 1783625175155081216
author Cai, Bo
Guo, Xianguang
Jiang, Jianping
author_facet Cai, Bo
Guo, Xianguang
Jiang, Jianping
author_sort Cai, Bo
collection PubMed
description The Asian Glass Lizard, Dopasia gracillis, has wide distribution in North India, Nepal, South China, and Indochina. In this study, a complete mitochondrial genome of D. gracillis from the Yungui Plateau in Southwest China was determined by next-generation sequencing. Similar to the typical mtDNA of vertebrates, the mitogenome was 17,133 bp in length and comprised the standard set of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 1 control region. The concatenated PCGs were used to conduct Bayesian phylogenetic analyses together with mitogenome data of Anguidae and related taxa in GenBank. The resulting phylogenetic tree confirmed the monophyly of Anguidae and Aguinae as well as D. gracillis, respectively. The mitogenome reported here will contribute to the examination of phylogeographic structure for D. gracillis and understanding of mitochondrial DNA evolution in Anguidae.
format Online
Article
Text
id pubmed-7748712
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77487122020-12-22 Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China Cai, Bo Guo, Xianguang Jiang, Jianping Mitochondrial DNA B Resour Mitogenome Announcement The Asian Glass Lizard, Dopasia gracillis, has wide distribution in North India, Nepal, South China, and Indochina. In this study, a complete mitochondrial genome of D. gracillis from the Yungui Plateau in Southwest China was determined by next-generation sequencing. Similar to the typical mtDNA of vertebrates, the mitogenome was 17,133 bp in length and comprised the standard set of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 1 control region. The concatenated PCGs were used to conduct Bayesian phylogenetic analyses together with mitogenome data of Anguidae and related taxa in GenBank. The resulting phylogenetic tree confirmed the monophyly of Anguidae and Aguinae as well as D. gracillis, respectively. The mitogenome reported here will contribute to the examination of phylogeographic structure for D. gracillis and understanding of mitochondrial DNA evolution in Anguidae. Taylor & Francis 2020-02-03 /pmc/articles/PMC7748712/ /pubmed/33366842 http://dx.doi.org/10.1080/23802359.2020.1720537 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Cai, Bo
Guo, Xianguang
Jiang, Jianping
Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China
title Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China
title_full Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China
title_fullStr Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China
title_full_unstemmed Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China
title_short Next-generation sequencing yields a complete mitochondrial genome of the Asian Glass Lizard (Dopasia gracillis) from the Yungui Plateau in Southwest China
title_sort next-generation sequencing yields a complete mitochondrial genome of the asian glass lizard (dopasia gracillis) from the yungui plateau in southwest china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748712/
https://www.ncbi.nlm.nih.gov/pubmed/33366842
http://dx.doi.org/10.1080/23802359.2020.1720537
work_keys_str_mv AT caibo nextgenerationsequencingyieldsacompletemitochondrialgenomeoftheasianglasslizarddopasiagracillisfromtheyunguiplateauinsouthwestchina
AT guoxianguang nextgenerationsequencingyieldsacompletemitochondrialgenomeoftheasianglasslizarddopasiagracillisfromtheyunguiplateauinsouthwestchina
AT jiangjianping nextgenerationsequencingyieldsacompletemitochondrialgenomeoftheasianglasslizarddopasiagracillisfromtheyunguiplateauinsouthwestchina