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The complete mitochondrial genome of an edible mushroom, Sparassis crispa
Sparassis crispa, also known as cauliflower mushroom, is a widely used medicinal mushroom in traditional Chinese medicine due to the presence of bioactive substances with pharmacological activity. Here, we report a complete mitochondrial genome sequence of S. crispa consisting of 139,253 bp containi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748716/ https://www.ncbi.nlm.nih.gov/pubmed/33366786 http://dx.doi.org/10.1080/23802359.2020.1715855 |
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author | Bashir, Khawaja Muhammad Imran Rheu, Kyoung Min Kim, Moo-Sang Cho, Man-Gi |
author_facet | Bashir, Khawaja Muhammad Imran Rheu, Kyoung Min Kim, Moo-Sang Cho, Man-Gi |
author_sort | Bashir, Khawaja Muhammad Imran |
collection | PubMed |
description | Sparassis crispa, also known as cauliflower mushroom, is a widely used medicinal mushroom in traditional Chinese medicine due to the presence of bioactive substances with pharmacological activity. Here, we report a complete mitochondrial genome sequence of S. crispa consisting of 139,253 bp containing 47 genes including 15 protein-coding genes, 27 transfer RNA, and 5 ribosomal RNA genes obtained from 40.406 Mb genome containing 18,917 predicted contigs using raw data of next-generation sequencing having 85.4% Q30. The overall base composition of S. crispa was 26.47% G-C and 73.53% A-T. The phylogenetic tree based on atp6 sequence data showed its close relationship with Sparassis radicata. The complete mitochondrial genome sequence of S. crispa provides an essential and important DNA molecular data for further phylogenetic and evolutionary analysis of S. crispa. |
format | Online Article Text |
id | pubmed-7748716 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77487162020-12-22 The complete mitochondrial genome of an edible mushroom, Sparassis crispa Bashir, Khawaja Muhammad Imran Rheu, Kyoung Min Kim, Moo-Sang Cho, Man-Gi Mitochondrial DNA B Resour Mitogenome Announcement Sparassis crispa, also known as cauliflower mushroom, is a widely used medicinal mushroom in traditional Chinese medicine due to the presence of bioactive substances with pharmacological activity. Here, we report a complete mitochondrial genome sequence of S. crispa consisting of 139,253 bp containing 47 genes including 15 protein-coding genes, 27 transfer RNA, and 5 ribosomal RNA genes obtained from 40.406 Mb genome containing 18,917 predicted contigs using raw data of next-generation sequencing having 85.4% Q30. The overall base composition of S. crispa was 26.47% G-C and 73.53% A-T. The phylogenetic tree based on atp6 sequence data showed its close relationship with Sparassis radicata. The complete mitochondrial genome sequence of S. crispa provides an essential and important DNA molecular data for further phylogenetic and evolutionary analysis of S. crispa. Taylor & Francis 2020-01-27 /pmc/articles/PMC7748716/ /pubmed/33366786 http://dx.doi.org/10.1080/23802359.2020.1715855 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Bashir, Khawaja Muhammad Imran Rheu, Kyoung Min Kim, Moo-Sang Cho, Man-Gi The complete mitochondrial genome of an edible mushroom, Sparassis crispa |
title | The complete mitochondrial genome of an edible mushroom, Sparassis crispa |
title_full | The complete mitochondrial genome of an edible mushroom, Sparassis crispa |
title_fullStr | The complete mitochondrial genome of an edible mushroom, Sparassis crispa |
title_full_unstemmed | The complete mitochondrial genome of an edible mushroom, Sparassis crispa |
title_short | The complete mitochondrial genome of an edible mushroom, Sparassis crispa |
title_sort | complete mitochondrial genome of an edible mushroom, sparassis crispa |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748716/ https://www.ncbi.nlm.nih.gov/pubmed/33366786 http://dx.doi.org/10.1080/23802359.2020.1715855 |
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