Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships

In this study, I presented the chloroplast genome of Houttuynia cordata Thunb using BGISEQ-500 sequencing data. Its chloroplast genome is 160,226 bp in size. It contains a pair of inverted repeat regions of 26,853 bp, each separating a small single copy region of 18,340 bp and a large single copy re...

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Autor principal: Yang, Xue-Lian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748723/
https://www.ncbi.nlm.nih.gov/pubmed/33366667
http://dx.doi.org/10.1080/23802359.2019.1710604
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author Yang, Xue-Lian
author_facet Yang, Xue-Lian
author_sort Yang, Xue-Lian
collection PubMed
description In this study, I presented the chloroplast genome of Houttuynia cordata Thunb using BGISEQ-500 sequencing data. Its chloroplast genome is 160,226 bp in size. It contains a pair of inverted repeat regions of 26,853 bp, each separating a small single copy region of 18,340 bp and a large single copy region of 88,180 bp. Totally, 112 unique genes, including 78 protein coding genes, 30 tRNAs and 4 rRNAs, were identified and annotated in the chloroplast genome. Phylogenetic maximum likelihood analysis indicated that H. cordata Thunb is closest to Piper cenocladu.
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spelling pubmed-77487232020-12-22 Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships Yang, Xue-Lian Mitochondrial DNA B Resour Mitogenome Announcement In this study, I presented the chloroplast genome of Houttuynia cordata Thunb using BGISEQ-500 sequencing data. Its chloroplast genome is 160,226 bp in size. It contains a pair of inverted repeat regions of 26,853 bp, each separating a small single copy region of 18,340 bp and a large single copy region of 88,180 bp. Totally, 112 unique genes, including 78 protein coding genes, 30 tRNAs and 4 rRNAs, were identified and annotated in the chloroplast genome. Phylogenetic maximum likelihood analysis indicated that H. cordata Thunb is closest to Piper cenocladu. Taylor & Francis 2020-01-14 /pmc/articles/PMC7748723/ /pubmed/33366667 http://dx.doi.org/10.1080/23802359.2019.1710604 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yang, Xue-Lian
Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships
title Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships
title_full Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships
title_fullStr Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships
title_full_unstemmed Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships
title_short Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships
title_sort characterization of the complete chloroplast genome of houttuynia cordata thunb and phylogenetic relationships
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748723/
https://www.ncbi.nlm.nih.gov/pubmed/33366667
http://dx.doi.org/10.1080/23802359.2019.1710604
work_keys_str_mv AT yangxuelian characterizationofthecompletechloroplastgenomeofhouttuyniacordatathunbandphylogeneticrelationships

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