Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree

Aquilaria sinensis is one of the most important agarwood-producing trees but critically endangered at present. In this study, we produced the complete chloroplast (cp) genome of A. sinensis via genome survey analysis. The assembled genome is 174,914 base-pairs (bp) in length, with one large single-c...

Descripción completa

Detalles Bibliográficos
Autores principales: Deng, Xin, Jiang, Zhenxing, Jiang, Qingbin, Guo, Wei, Li, Yongquan, Zhang, Xianzhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748732/
https://www.ncbi.nlm.nih.gov/pubmed/33366584
http://dx.doi.org/10.1080/23802359.2019.1703593
_version_ 1783625179769864192
author Deng, Xin
Jiang, Zhenxing
Jiang, Qingbin
Guo, Wei
Li, Yongquan
Zhang, Xianzhi
author_facet Deng, Xin
Jiang, Zhenxing
Jiang, Qingbin
Guo, Wei
Li, Yongquan
Zhang, Xianzhi
author_sort Deng, Xin
collection PubMed
description Aquilaria sinensis is one of the most important agarwood-producing trees but critically endangered at present. In this study, we produced the complete chloroplast (cp) genome of A. sinensis via genome survey analysis. The assembled genome is 174,914 base-pairs (bp) in length, with one large single-copy region of 87,361 bp and one small single-copy region of 3347 bp separated by two inverted repeats of 42,103 bp. The genome contains a total of 142 genes, including 96 protein-coding genes, 8 rRNAs, and 38 tRNAs. The phylogenomic tree strongly supports Aquilaria as a monophyly and A. sinensis sister to A. yunnanensis.
format Online
Article
Text
id pubmed-7748732
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77487322020-12-22 Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree Deng, Xin Jiang, Zhenxing Jiang, Qingbin Guo, Wei Li, Yongquan Zhang, Xianzhi Mitochondrial DNA B Resour Mitogenome Announcement Aquilaria sinensis is one of the most important agarwood-producing trees but critically endangered at present. In this study, we produced the complete chloroplast (cp) genome of A. sinensis via genome survey analysis. The assembled genome is 174,914 base-pairs (bp) in length, with one large single-copy region of 87,361 bp and one small single-copy region of 3347 bp separated by two inverted repeats of 42,103 bp. The genome contains a total of 142 genes, including 96 protein-coding genes, 8 rRNAs, and 38 tRNAs. The phylogenomic tree strongly supports Aquilaria as a monophyly and A. sinensis sister to A. yunnanensis. Taylor & Francis 2020-01-08 /pmc/articles/PMC7748732/ /pubmed/33366584 http://dx.doi.org/10.1080/23802359.2019.1703593 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Deng, Xin
Jiang, Zhenxing
Jiang, Qingbin
Guo, Wei
Li, Yongquan
Zhang, Xianzhi
Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree
title Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree
title_full Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree
title_fullStr Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree
title_full_unstemmed Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree
title_short Characterization of the complete chloroplast genome of Aquilaria sinensis, an endangered agarwood-producing tree
title_sort characterization of the complete chloroplast genome of aquilaria sinensis, an endangered agarwood-producing tree
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748732/
https://www.ncbi.nlm.nih.gov/pubmed/33366584
http://dx.doi.org/10.1080/23802359.2019.1703593
work_keys_str_mv AT dengxin characterizationofthecompletechloroplastgenomeofaquilariasinensisanendangeredagarwoodproducingtree
AT jiangzhenxing characterizationofthecompletechloroplastgenomeofaquilariasinensisanendangeredagarwoodproducingtree
AT jiangqingbin characterizationofthecompletechloroplastgenomeofaquilariasinensisanendangeredagarwoodproducingtree
AT guowei characterizationofthecompletechloroplastgenomeofaquilariasinensisanendangeredagarwoodproducingtree
AT liyongquan characterizationofthecompletechloroplastgenomeofaquilariasinensisanendangeredagarwoodproducingtree
AT zhangxianzhi characterizationofthecompletechloroplastgenomeofaquilariasinensisanendangeredagarwoodproducingtree

Ejemplares similares