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The complete chloroplast genome sequence of Cinnamomum kotoense

The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which...

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Autores principales: Yuan, Xiaolong, Li, Yunqing, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748733/
https://www.ncbi.nlm.nih.gov/pubmed/33366543
http://dx.doi.org/10.1080/23802359.2019.1703604
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author Yuan, Xiaolong
Li, Yunqing
Wang, Yi
author_facet Yuan, Xiaolong
Li, Yunqing
Wang, Yi
author_sort Yuan, Xiaolong
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which were separated by a pair of inverted repeats (IR) regions of 20,752 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.2%, and the corresponding values of the LSC, SSC, and IR regions are 37.9%, 33.9%, and 44.3%, respectively. Further phylogenomic analysis showed that C. kotoense and Cinnamomum bodinieri clustered in a clade in Cinnamomum genus.
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spelling pubmed-77487332020-12-22 The complete chloroplast genome sequence of Cinnamomum kotoense Yuan, Xiaolong Li, Yunqing Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which were separated by a pair of inverted repeats (IR) regions of 20,752 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.2%, and the corresponding values of the LSC, SSC, and IR regions are 37.9%, 33.9%, and 44.3%, respectively. Further phylogenomic analysis showed that C. kotoense and Cinnamomum bodinieri clustered in a clade in Cinnamomum genus. Taylor & Francis 2019-12-18 /pmc/articles/PMC7748733/ /pubmed/33366543 http://dx.doi.org/10.1080/23802359.2019.1703604 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yuan, Xiaolong
Li, Yunqing
Wang, Yi
The complete chloroplast genome sequence of Cinnamomum kotoense
title The complete chloroplast genome sequence of Cinnamomum kotoense
title_full The complete chloroplast genome sequence of Cinnamomum kotoense
title_fullStr The complete chloroplast genome sequence of Cinnamomum kotoense
title_full_unstemmed The complete chloroplast genome sequence of Cinnamomum kotoense
title_short The complete chloroplast genome sequence of Cinnamomum kotoense
title_sort complete chloroplast genome sequence of cinnamomum kotoense
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748733/
https://www.ncbi.nlm.nih.gov/pubmed/33366543
http://dx.doi.org/10.1080/23802359.2019.1703604
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