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The complete chloroplast genome sequence of Cinnamomum kotoense
The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748733/ https://www.ncbi.nlm.nih.gov/pubmed/33366543 http://dx.doi.org/10.1080/23802359.2019.1703604 |
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author | Yuan, Xiaolong Li, Yunqing Wang, Yi |
author_facet | Yuan, Xiaolong Li, Yunqing Wang, Yi |
author_sort | Yuan, Xiaolong |
collection | PubMed |
description | The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which were separated by a pair of inverted repeats (IR) regions of 20,752 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.2%, and the corresponding values of the LSC, SSC, and IR regions are 37.9%, 33.9%, and 44.3%, respectively. Further phylogenomic analysis showed that C. kotoense and Cinnamomum bodinieri clustered in a clade in Cinnamomum genus. |
format | Online Article Text |
id | pubmed-7748733 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77487332020-12-22 The complete chloroplast genome sequence of Cinnamomum kotoense Yuan, Xiaolong Li, Yunqing Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which were separated by a pair of inverted repeats (IR) regions of 20,752 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.2%, and the corresponding values of the LSC, SSC, and IR regions are 37.9%, 33.9%, and 44.3%, respectively. Further phylogenomic analysis showed that C. kotoense and Cinnamomum bodinieri clustered in a clade in Cinnamomum genus. Taylor & Francis 2019-12-18 /pmc/articles/PMC7748733/ /pubmed/33366543 http://dx.doi.org/10.1080/23802359.2019.1703604 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yuan, Xiaolong Li, Yunqing Wang, Yi The complete chloroplast genome sequence of Cinnamomum kotoense |
title | The complete chloroplast genome sequence of Cinnamomum kotoense |
title_full | The complete chloroplast genome sequence of Cinnamomum kotoense |
title_fullStr | The complete chloroplast genome sequence of Cinnamomum kotoense |
title_full_unstemmed | The complete chloroplast genome sequence of Cinnamomum kotoense |
title_short | The complete chloroplast genome sequence of Cinnamomum kotoense |
title_sort | complete chloroplast genome sequence of cinnamomum kotoense |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748733/ https://www.ncbi.nlm.nih.gov/pubmed/33366543 http://dx.doi.org/10.1080/23802359.2019.1703604 |
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