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Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae)

We sequenced, assembled, and annotated the complete mitochondrial genome of the seed beetle Caryopemon giganteus, which represents the first report in the tribe Caryopemini from the subfamily Bruchinae of Chrysomelidae. The circular mitochondrial genome of the species contains 15,727 bases, 13 prote...

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Autores principales: Wu, Mingsong, Qian, Xin, Qin, Ming, Tu, Tieyao, Zhang, Runzhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748735/
https://www.ncbi.nlm.nih.gov/pubmed/33366814
http://dx.doi.org/10.1080/23802359.2020.1719927
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author Wu, Mingsong
Qian, Xin
Qin, Ming
Tu, Tieyao
Zhang, Runzhi
author_facet Wu, Mingsong
Qian, Xin
Qin, Ming
Tu, Tieyao
Zhang, Runzhi
author_sort Wu, Mingsong
collection PubMed
description We sequenced, assembled, and annotated the complete mitochondrial genome of the seed beetle Caryopemon giganteus, which represents the first report in the tribe Caryopemini from the subfamily Bruchinae of Chrysomelidae. The circular mitochondrial genome of the species contains 15,727 bases, 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and a non-coding region. The GC content of the genome is 25.3%, which is higher than any other reported mitochondrial genomes within Bruchinae. The 16S ribosomal RNA gene and the 12S ribosomal RNA gene are 1284 and 835 bp in length, respectively. 12 PCGs started with the typical ATN codon, except for ND1 initiated with TTG. Five PCGs have the typical stop codon of TAA or TGA, while the remainder PCGs are terminated with incomplete stop codons (TA or T). The phylogenetic analysis based on a combination of 13 genes of the mitochondrial genomes of six species of Bruchinae and 23 species from other 10 subfamilies of Chrysomelidae recovered a generally well resolved and strongly supported tree topology, which shows that C. giganteus has the basalmost position in Bruchinae.
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spelling pubmed-77487352020-12-22 Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae) Wu, Mingsong Qian, Xin Qin, Ming Tu, Tieyao Zhang, Runzhi Mitochondrial DNA B Resour Mitogenome Announcement We sequenced, assembled, and annotated the complete mitochondrial genome of the seed beetle Caryopemon giganteus, which represents the first report in the tribe Caryopemini from the subfamily Bruchinae of Chrysomelidae. The circular mitochondrial genome of the species contains 15,727 bases, 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and a non-coding region. The GC content of the genome is 25.3%, which is higher than any other reported mitochondrial genomes within Bruchinae. The 16S ribosomal RNA gene and the 12S ribosomal RNA gene are 1284 and 835 bp in length, respectively. 12 PCGs started with the typical ATN codon, except for ND1 initiated with TTG. Five PCGs have the typical stop codon of TAA or TGA, while the remainder PCGs are terminated with incomplete stop codons (TA or T). The phylogenetic analysis based on a combination of 13 genes of the mitochondrial genomes of six species of Bruchinae and 23 species from other 10 subfamilies of Chrysomelidae recovered a generally well resolved and strongly supported tree topology, which shows that C. giganteus has the basalmost position in Bruchinae. Taylor & Francis 2020-01-29 /pmc/articles/PMC7748735/ /pubmed/33366814 http://dx.doi.org/10.1080/23802359.2020.1719927 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wu, Mingsong
Qian, Xin
Qin, Ming
Tu, Tieyao
Zhang, Runzhi
Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae)
title Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae)
title_full Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae)
title_fullStr Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae)
title_full_unstemmed Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae)
title_short Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae)
title_sort characterization of the complete mitochondrial genome of caryopemon giganteus pic (coleoptera: chrysomelidae: bruchinae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748735/
https://www.ncbi.nlm.nih.gov/pubmed/33366814
http://dx.doi.org/10.1080/23802359.2020.1719927
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