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Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)
Cymbidium bicolor belongs to Orchid family (Orchidaceae), it has high ornamental and traditional medicinal value. The complete chloroplast genome of C. bicolor was sequenced using the Illumina Hiseq platform. The size of the C. bicolor chloroplast genome is 156,528 bp, with an average GC content of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748745/ https://www.ncbi.nlm.nih.gov/pubmed/33366539 http://dx.doi.org/10.1080/23802359.2019.1703591 |
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author | Hu, Guojia Zhou, Huijuan Zhang, Shuonxin Zhao, Peng |
author_facet | Hu, Guojia Zhou, Huijuan Zhang, Shuonxin Zhao, Peng |
author_sort | Hu, Guojia |
collection | PubMed |
description | Cymbidium bicolor belongs to Orchid family (Orchidaceae), it has high ornamental and traditional medicinal value. The complete chloroplast genome of C. bicolor was sequenced using the Illumina Hiseq platform. The size of the C. bicolor chloroplast genome is 156,528 bp, with an average GC content of 36.8%. This chloroplast genome has containing a large single copy (LSC) region of 85,907 bp, a small single copy (SSC) region of 17,215 bp, and two inverted (IRa and IRb) repeat regions of two 26,703 bp. A total of 124 genes were annotated, including 78 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. A maximum likelihood phylogenetic tree indicated that C. bicolor is closely related to C. mannii in the genus Cymbidium based on 16 whole chloroplast genome sequences. |
format | Online Article Text |
id | pubmed-7748745 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77487452020-12-22 Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) Hu, Guojia Zhou, Huijuan Zhang, Shuonxin Zhao, Peng Mitochondrial DNA B Resour Mitogenome Announcement Cymbidium bicolor belongs to Orchid family (Orchidaceae), it has high ornamental and traditional medicinal value. The complete chloroplast genome of C. bicolor was sequenced using the Illumina Hiseq platform. The size of the C. bicolor chloroplast genome is 156,528 bp, with an average GC content of 36.8%. This chloroplast genome has containing a large single copy (LSC) region of 85,907 bp, a small single copy (SSC) region of 17,215 bp, and two inverted (IRa and IRb) repeat regions of two 26,703 bp. A total of 124 genes were annotated, including 78 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. A maximum likelihood phylogenetic tree indicated that C. bicolor is closely related to C. mannii in the genus Cymbidium based on 16 whole chloroplast genome sequences. Taylor & Francis 2019-12-18 /pmc/articles/PMC7748745/ /pubmed/33366539 http://dx.doi.org/10.1080/23802359.2019.1703591 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Hu, Guojia Zhou, Huijuan Zhang, Shuonxin Zhao, Peng Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) |
title | Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) |
title_full | Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) |
title_fullStr | Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) |
title_short | Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) |
title_sort | characterization of the complete chloroplast genome of orchid family species cymbidium bicolor (orchidaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748745/ https://www.ncbi.nlm.nih.gov/pubmed/33366539 http://dx.doi.org/10.1080/23802359.2019.1703591 |
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