Cargando…

Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)

Cymbidium bicolor belongs to Orchid family (Orchidaceae), it has high ornamental and traditional medicinal value. The complete chloroplast genome of C. bicolor was sequenced using the Illumina Hiseq platform. The size of the C. bicolor chloroplast genome is 156,528 bp, with an average GC content of...

Descripción completa

Detalles Bibliográficos
Autores principales: Hu, Guojia, Zhou, Huijuan, Zhang, Shuonxin, Zhao, Peng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748745/
https://www.ncbi.nlm.nih.gov/pubmed/33366539
http://dx.doi.org/10.1080/23802359.2019.1703591
_version_ 1783625182876794880
author Hu, Guojia
Zhou, Huijuan
Zhang, Shuonxin
Zhao, Peng
author_facet Hu, Guojia
Zhou, Huijuan
Zhang, Shuonxin
Zhao, Peng
author_sort Hu, Guojia
collection PubMed
description Cymbidium bicolor belongs to Orchid family (Orchidaceae), it has high ornamental and traditional medicinal value. The complete chloroplast genome of C. bicolor was sequenced using the Illumina Hiseq platform. The size of the C. bicolor chloroplast genome is 156,528 bp, with an average GC content of 36.8%. This chloroplast genome has containing a large single copy (LSC) region of 85,907 bp, a small single copy (SSC) region of 17,215 bp, and two inverted (IRa and IRb) repeat regions of two 26,703 bp. A total of 124 genes were annotated, including 78 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. A maximum likelihood phylogenetic tree indicated that C. bicolor is closely related to C. mannii in the genus Cymbidium based on 16 whole chloroplast genome sequences.
format Online
Article
Text
id pubmed-7748745
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77487452020-12-22 Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae) Hu, Guojia Zhou, Huijuan Zhang, Shuonxin Zhao, Peng Mitochondrial DNA B Resour Mitogenome Announcement Cymbidium bicolor belongs to Orchid family (Orchidaceae), it has high ornamental and traditional medicinal value. The complete chloroplast genome of C. bicolor was sequenced using the Illumina Hiseq platform. The size of the C. bicolor chloroplast genome is 156,528 bp, with an average GC content of 36.8%. This chloroplast genome has containing a large single copy (LSC) region of 85,907 bp, a small single copy (SSC) region of 17,215 bp, and two inverted (IRa and IRb) repeat regions of two 26,703 bp. A total of 124 genes were annotated, including 78 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. A maximum likelihood phylogenetic tree indicated that C. bicolor is closely related to C. mannii in the genus Cymbidium based on 16 whole chloroplast genome sequences. Taylor & Francis 2019-12-18 /pmc/articles/PMC7748745/ /pubmed/33366539 http://dx.doi.org/10.1080/23802359.2019.1703591 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Hu, Guojia
Zhou, Huijuan
Zhang, Shuonxin
Zhao, Peng
Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)
title Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)
title_full Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)
title_fullStr Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)
title_short Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae)
title_sort characterization of the complete chloroplast genome of orchid family species cymbidium bicolor (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748745/
https://www.ncbi.nlm.nih.gov/pubmed/33366539
http://dx.doi.org/10.1080/23802359.2019.1703591
work_keys_str_mv AT huguojia characterizationofthecompletechloroplastgenomeoforchidfamilyspeciescymbidiumbicolororchidaceae
AT zhouhuijuan characterizationofthecompletechloroplastgenomeoforchidfamilyspeciescymbidiumbicolororchidaceae
AT zhangshuonxin characterizationofthecompletechloroplastgenomeoforchidfamilyspeciescymbidiumbicolororchidaceae
AT zhaopeng characterizationofthecompletechloroplastgenomeoforchidfamilyspeciescymbidiumbicolororchidaceae