The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae)

Distylium macrophyllum H.T.Chang is a critically endangered tree species endemic to southern China. In this study, we assembled and characterized the plastome of D. macrophyllum using Illumina paired-end data. The circular genome is 159,089 bp in size, consisting of two copies of inverted repeat (IR...

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Autores principales: Chen, Shuifei, Li, Yao, Wang, Lu, Xie, Lei, Ge, Xiaomin, Zhou, Xu, Hu, Yaping, Zhang, Wenwen, Fang, Yanming, Ding, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748762/
https://www.ncbi.nlm.nih.gov/pubmed/33366710
http://dx.doi.org/10.1080/23802359.2019.1703606
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author Chen, Shuifei
Li, Yao
Wang, Lu
Xie, Lei
Ge, Xiaomin
Zhou, Xu
Hu, Yaping
Zhang, Wenwen
Fang, Yanming
Ding, Hui
author_facet Chen, Shuifei
Li, Yao
Wang, Lu
Xie, Lei
Ge, Xiaomin
Zhou, Xu
Hu, Yaping
Zhang, Wenwen
Fang, Yanming
Ding, Hui
author_sort Chen, Shuifei
collection PubMed
description Distylium macrophyllum H.T.Chang is a critically endangered tree species endemic to southern China. In this study, we assembled and characterized the plastome of D. macrophyllum using Illumina paired-end data. The circular genome is 159,089 bp in size, consisting of two copies of inverted repeat (IR) regions of 26,235 bp, one large single-copy (LSC) region of 87,822 bp, and one small single-copy (SSC) region of 18,797 bp. It encodes a total of 114 unique genes, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 13 cp genome sequences indicated that D. macrophyllum was sister to the clade of D. tsiangii and Parrotia subaequalis.
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spelling pubmed-77487622020-12-22 The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae) Chen, Shuifei Li, Yao Wang, Lu Xie, Lei Ge, Xiaomin Zhou, Xu Hu, Yaping Zhang, Wenwen Fang, Yanming Ding, Hui Mitochondrial DNA B Resour Mitogenome Announcement Distylium macrophyllum H.T.Chang is a critically endangered tree species endemic to southern China. In this study, we assembled and characterized the plastome of D. macrophyllum using Illumina paired-end data. The circular genome is 159,089 bp in size, consisting of two copies of inverted repeat (IR) regions of 26,235 bp, one large single-copy (LSC) region of 87,822 bp, and one small single-copy (SSC) region of 18,797 bp. It encodes a total of 114 unique genes, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 13 cp genome sequences indicated that D. macrophyllum was sister to the clade of D. tsiangii and Parrotia subaequalis. Taylor & Francis 2020-01-20 /pmc/articles/PMC7748762/ /pubmed/33366710 http://dx.doi.org/10.1080/23802359.2019.1703606 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Shuifei
Li, Yao
Wang, Lu
Xie, Lei
Ge, Xiaomin
Zhou, Xu
Hu, Yaping
Zhang, Wenwen
Fang, Yanming
Ding, Hui
The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae)
title The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae)
title_full The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae)
title_fullStr The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae)
title_full_unstemmed The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae)
title_short The complete chloroplast genome sequence of Distylium macrophyllum (Hamamelidaceae)
title_sort complete chloroplast genome sequence of distylium macrophyllum (hamamelidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748762/
https://www.ncbi.nlm.nih.gov/pubmed/33366710
http://dx.doi.org/10.1080/23802359.2019.1703606
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