The complete chloroplast genome of a fern genus Thelypteris interrupta

In this study, we report the complete chloroplast (cp) genome of Thelypteris interrupta, a fern member, and comparative analysis with its related family members. The cp genome was 155,983 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (25,614 bp) separate...

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Autores principales: Ramekar, Rahul Vasudeo, Choi, Ik-Young, Kwak, Myounghai, Cheong, Eun Ju, Park, Kyong-Cheul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748766/
https://www.ncbi.nlm.nih.gov/pubmed/33366652
http://dx.doi.org/10.1080/23802359.2019.1710294
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author Ramekar, Rahul Vasudeo
Choi, Ik-Young
Kwak, Myounghai
Cheong, Eun Ju
Park, Kyong-Cheul
author_facet Ramekar, Rahul Vasudeo
Choi, Ik-Young
Kwak, Myounghai
Cheong, Eun Ju
Park, Kyong-Cheul
author_sort Ramekar, Rahul Vasudeo
collection PubMed
description In this study, we report the complete chloroplast (cp) genome of Thelypteris interrupta, a fern member, and comparative analysis with its related family members. The cp genome was 155,983 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (25,614 bp) separated by a large (82,769 bp) and small (21,986 bp) single-copy (SC) region. The genome encodes a total of 88 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. Additionally, we identified 86 RNA editing sites in 52 genes; most of the substitution was U to C (52 sites), while C to U conversion occurred in 34 positions. The phylogenetic analysis strongly supported the relationship of T. interrupta with Ampelopteris prolifera and Christella appendiculata of Thelypteridoideae family.
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spelling pubmed-77487662020-12-22 The complete chloroplast genome of a fern genus Thelypteris interrupta Ramekar, Rahul Vasudeo Choi, Ik-Young Kwak, Myounghai Cheong, Eun Ju Park, Kyong-Cheul Mitochondrial DNA B Resour Mitogenome Announcement In this study, we report the complete chloroplast (cp) genome of Thelypteris interrupta, a fern member, and comparative analysis with its related family members. The cp genome was 155,983 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (25,614 bp) separated by a large (82,769 bp) and small (21,986 bp) single-copy (SC) region. The genome encodes a total of 88 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. Additionally, we identified 86 RNA editing sites in 52 genes; most of the substitution was U to C (52 sites), while C to U conversion occurred in 34 positions. The phylogenetic analysis strongly supported the relationship of T. interrupta with Ampelopteris prolifera and Christella appendiculata of Thelypteridoideae family. Taylor & Francis 2020-01-14 /pmc/articles/PMC7748766/ /pubmed/33366652 http://dx.doi.org/10.1080/23802359.2019.1710294 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ramekar, Rahul Vasudeo
Choi, Ik-Young
Kwak, Myounghai
Cheong, Eun Ju
Park, Kyong-Cheul
The complete chloroplast genome of a fern genus Thelypteris interrupta
title The complete chloroplast genome of a fern genus Thelypteris interrupta
title_full The complete chloroplast genome of a fern genus Thelypteris interrupta
title_fullStr The complete chloroplast genome of a fern genus Thelypteris interrupta
title_full_unstemmed The complete chloroplast genome of a fern genus Thelypteris interrupta
title_short The complete chloroplast genome of a fern genus Thelypteris interrupta
title_sort complete chloroplast genome of a fern genus thelypteris interrupta
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748766/
https://www.ncbi.nlm.nih.gov/pubmed/33366652
http://dx.doi.org/10.1080/23802359.2019.1710294
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