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Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China

Limonium aureum is a perennial herb of Plumbaginaceae, and draw the attention of researchers by its medicinal and ecological value. In this study, we first report the complete chloroplast genome of L. aureum with paired-end sequencing method. The results showed that the complete chloroplast genome o...

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Autores principales: Zhang, Xiaoyin, Xu, Yao, Liu, Xiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748777/
https://www.ncbi.nlm.nih.gov/pubmed/33366544
http://dx.doi.org/10.1080/23802359.2019.1703608
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author Zhang, Xiaoyin
Xu, Yao
Liu, Xiao
author_facet Zhang, Xiaoyin
Xu, Yao
Liu, Xiao
author_sort Zhang, Xiaoyin
collection PubMed
description Limonium aureum is a perennial herb of Plumbaginaceae, and draw the attention of researchers by its medicinal and ecological value. In this study, we first report the complete chloroplast genome of L. aureum with paired-end sequencing method. The results showed that the complete chloroplast genome of L. aureum is 154,661 bp in length with a typical quadripartite structure, including a large single-copy region (LSC, 84,545 bp), a single-copy region (SSC, 12, 980 bp), and a pair of inverted repeats (IRs, 28,568 bp). There are 113 annotated genes, consisting of 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. Moreover, we constructed a phylogenetic tree with L. aureum and other 34 species based on their complete chloroplast genomes. And the results of the phylogenetic topologies displayed that Plumbago auriculata was closely related to L. aureum. Our results will contribute to the better study and make use of the species.
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spelling pubmed-77487772020-12-22 Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China Zhang, Xiaoyin Xu, Yao Liu, Xiao Mitochondrial DNA B Resour Mitogenome Announcement Limonium aureum is a perennial herb of Plumbaginaceae, and draw the attention of researchers by its medicinal and ecological value. In this study, we first report the complete chloroplast genome of L. aureum with paired-end sequencing method. The results showed that the complete chloroplast genome of L. aureum is 154,661 bp in length with a typical quadripartite structure, including a large single-copy region (LSC, 84,545 bp), a single-copy region (SSC, 12, 980 bp), and a pair of inverted repeats (IRs, 28,568 bp). There are 113 annotated genes, consisting of 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. Moreover, we constructed a phylogenetic tree with L. aureum and other 34 species based on their complete chloroplast genomes. And the results of the phylogenetic topologies displayed that Plumbago auriculata was closely related to L. aureum. Our results will contribute to the better study and make use of the species. Taylor & Francis 2019-12-18 /pmc/articles/PMC7748777/ /pubmed/33366544 http://dx.doi.org/10.1080/23802359.2019.1703608 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Xiaoyin
Xu, Yao
Liu, Xiao
Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China
title Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China
title_full Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China
title_fullStr Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China
title_full_unstemmed Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China
title_short Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China
title_sort complete plastome sequence of limonium aureum, a medicinal and ornamental species in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748777/
https://www.ncbi.nlm.nih.gov/pubmed/33366544
http://dx.doi.org/10.1080/23802359.2019.1703608
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