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Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China
Limonium aureum is a perennial herb of Plumbaginaceae, and draw the attention of researchers by its medicinal and ecological value. In this study, we first report the complete chloroplast genome of L. aureum with paired-end sequencing method. The results showed that the complete chloroplast genome o...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748777/ https://www.ncbi.nlm.nih.gov/pubmed/33366544 http://dx.doi.org/10.1080/23802359.2019.1703608 |
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author | Zhang, Xiaoyin Xu, Yao Liu, Xiao |
author_facet | Zhang, Xiaoyin Xu, Yao Liu, Xiao |
author_sort | Zhang, Xiaoyin |
collection | PubMed |
description | Limonium aureum is a perennial herb of Plumbaginaceae, and draw the attention of researchers by its medicinal and ecological value. In this study, we first report the complete chloroplast genome of L. aureum with paired-end sequencing method. The results showed that the complete chloroplast genome of L. aureum is 154,661 bp in length with a typical quadripartite structure, including a large single-copy region (LSC, 84,545 bp), a single-copy region (SSC, 12, 980 bp), and a pair of inverted repeats (IRs, 28,568 bp). There are 113 annotated genes, consisting of 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. Moreover, we constructed a phylogenetic tree with L. aureum and other 34 species based on their complete chloroplast genomes. And the results of the phylogenetic topologies displayed that Plumbago auriculata was closely related to L. aureum. Our results will contribute to the better study and make use of the species. |
format | Online Article Text |
id | pubmed-7748777 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77487772020-12-22 Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China Zhang, Xiaoyin Xu, Yao Liu, Xiao Mitochondrial DNA B Resour Mitogenome Announcement Limonium aureum is a perennial herb of Plumbaginaceae, and draw the attention of researchers by its medicinal and ecological value. In this study, we first report the complete chloroplast genome of L. aureum with paired-end sequencing method. The results showed that the complete chloroplast genome of L. aureum is 154,661 bp in length with a typical quadripartite structure, including a large single-copy region (LSC, 84,545 bp), a single-copy region (SSC, 12, 980 bp), and a pair of inverted repeats (IRs, 28,568 bp). There are 113 annotated genes, consisting of 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. Moreover, we constructed a phylogenetic tree with L. aureum and other 34 species based on their complete chloroplast genomes. And the results of the phylogenetic topologies displayed that Plumbago auriculata was closely related to L. aureum. Our results will contribute to the better study and make use of the species. Taylor & Francis 2019-12-18 /pmc/articles/PMC7748777/ /pubmed/33366544 http://dx.doi.org/10.1080/23802359.2019.1703608 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Xiaoyin Xu, Yao Liu, Xiao Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China |
title | Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China |
title_full | Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China |
title_fullStr | Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China |
title_full_unstemmed | Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China |
title_short | Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China |
title_sort | complete plastome sequence of limonium aureum, a medicinal and ornamental species in china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748777/ https://www.ncbi.nlm.nih.gov/pubmed/33366544 http://dx.doi.org/10.1080/23802359.2019.1703608 |
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