The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis

The first complete chloroplast genome (cpDNA) sequence of Caryodaphnopsis tonkinensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 149,016 bp in length, contains a large single copy region (LSC) of 91,915 bp and a small single copy region (SSC) of 17,703 bp...

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Detalles Bibliográficos
Autores principales: Zheng, Yuan, Luo, Yana, Li, Yunqing, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748782/
https://www.ncbi.nlm.nih.gov/pubmed/33366487
http://dx.doi.org/10.1080/23802359.2019.1698997
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author Zheng, Yuan
Luo, Yana
Li, Yunqing
Wang, Yi
author_facet Zheng, Yuan
Luo, Yana
Li, Yunqing
Wang, Yi
author_sort Zheng, Yuan
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Caryodaphnopsis tonkinensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 149,016 bp in length, contains a large single copy region (LSC) of 91,915 bp and a small single copy region (SSC) of 17,703 bp, which were separated by a pair of inverted repeats (IR) regions of 19,699 bp. The genome contains 126 genes, including 81 protein-coding genes, eight ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.0%, and the corresponding values of the LSC, SSC, and IR regions are 37.7%, 34.4%, and 44.4%, respectively. Further phylogenomic analysis showed that C. tonkinensis clustered in a clade in Lauraceae family.
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spelling pubmed-77487822020-12-22 The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis Zheng, Yuan Luo, Yana Li, Yunqing Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Caryodaphnopsis tonkinensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 149,016 bp in length, contains a large single copy region (LSC) of 91,915 bp and a small single copy region (SSC) of 17,703 bp, which were separated by a pair of inverted repeats (IR) regions of 19,699 bp. The genome contains 126 genes, including 81 protein-coding genes, eight ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.0%, and the corresponding values of the LSC, SSC, and IR regions are 37.7%, 34.4%, and 44.4%, respectively. Further phylogenomic analysis showed that C. tonkinensis clustered in a clade in Lauraceae family. Taylor & Francis 2019-12-12 /pmc/articles/PMC7748782/ /pubmed/33366487 http://dx.doi.org/10.1080/23802359.2019.1698997 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zheng, Yuan
Luo, Yana
Li, Yunqing
Wang, Yi
The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
title The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
title_full The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
title_fullStr The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
title_full_unstemmed The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
title_short The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
title_sort complete chloroplast genome sequence of caryodaphnopsis tonkinensis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748782/
https://www.ncbi.nlm.nih.gov/pubmed/33366487
http://dx.doi.org/10.1080/23802359.2019.1698997
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