The complete chloroplast genome sequence of Prunus sibirica

In this study, the chloroplast genome sequence of Prunus sibirica was obtained from the whole genome sequencing data of Prunus sibirica. Its length is 158,248 bp, which consists of 86,331 bp large single-copy region (LSC), 26,408 bp two reverse repeat regions (IR) and 19,101 bp small single-copy reg...

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Autores principales: Dong, Shengjun, Zhang, Xin, Sun, Yongqiang, Xu, Hao, Zhang, Haokai, Chen, Jianhua, Liu, Mingguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748795/
https://www.ncbi.nlm.nih.gov/pubmed/33366656
http://dx.doi.org/10.1080/23802359.2019.1710589
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author Dong, Shengjun
Zhang, Xin
Sun, Yongqiang
Xu, Hao
Zhang, Haokai
Chen, Jianhua
Liu, Mingguo
author_facet Dong, Shengjun
Zhang, Xin
Sun, Yongqiang
Xu, Hao
Zhang, Haokai
Chen, Jianhua
Liu, Mingguo
author_sort Dong, Shengjun
collection PubMed
description In this study, the chloroplast genome sequence of Prunus sibirica was obtained from the whole genome sequencing data of Prunus sibirica. Its length is 158,248 bp, which consists of 86,331 bp large single-copy region (LSC), 26,408 bp two reverse repeat regions (IR) and 19,101 bp small single-copy region (SSC). GC content of the whole chloroplast genome is 36.71%. Those of LSC region, SSC region, and IR region were 35, 30, and 43%, respectively. There are 131 unique genes in the chloroplast genome, including 90 protein-coding genes, 33 tRNA genes, and 8 rRNA genes. A maximum-likelihood phylogenetic tree was generated from the chloroplast genomes of 10 species of Rosaceae and 11 peripheral plants. The results showed that Prunus sibirica belongs to Rosaceae and is sister to Prunus salicina.
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spelling pubmed-77487952020-12-22 The complete chloroplast genome sequence of Prunus sibirica Dong, Shengjun Zhang, Xin Sun, Yongqiang Xu, Hao Zhang, Haokai Chen, Jianhua Liu, Mingguo Mitochondrial DNA B Resour Mitogenome Announcement In this study, the chloroplast genome sequence of Prunus sibirica was obtained from the whole genome sequencing data of Prunus sibirica. Its length is 158,248 bp, which consists of 86,331 bp large single-copy region (LSC), 26,408 bp two reverse repeat regions (IR) and 19,101 bp small single-copy region (SSC). GC content of the whole chloroplast genome is 36.71%. Those of LSC region, SSC region, and IR region were 35, 30, and 43%, respectively. There are 131 unique genes in the chloroplast genome, including 90 protein-coding genes, 33 tRNA genes, and 8 rRNA genes. A maximum-likelihood phylogenetic tree was generated from the chloroplast genomes of 10 species of Rosaceae and 11 peripheral plants. The results showed that Prunus sibirica belongs to Rosaceae and is sister to Prunus salicina. Taylor & Francis 2020-01-14 /pmc/articles/PMC7748795/ /pubmed/33366656 http://dx.doi.org/10.1080/23802359.2019.1710589 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Dong, Shengjun
Zhang, Xin
Sun, Yongqiang
Xu, Hao
Zhang, Haokai
Chen, Jianhua
Liu, Mingguo
The complete chloroplast genome sequence of Prunus sibirica
title The complete chloroplast genome sequence of Prunus sibirica
title_full The complete chloroplast genome sequence of Prunus sibirica
title_fullStr The complete chloroplast genome sequence of Prunus sibirica
title_full_unstemmed The complete chloroplast genome sequence of Prunus sibirica
title_short The complete chloroplast genome sequence of Prunus sibirica
title_sort complete chloroplast genome sequence of prunus sibirica
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748795/
https://www.ncbi.nlm.nih.gov/pubmed/33366656
http://dx.doi.org/10.1080/23802359.2019.1710589
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