Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)

Sinopora hongkongensis is a critically endangered endemic tree species restricted to Hong Kong. Here we report its plastome sequence. The S. hongkongensis plastome was 158,612 bp in length, with a large single-copy (LSC) region of 89,405 bp and a small single-copy (SSC) region of 18,205 bp, separate...

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Autores principales: Carrion, Angelo Damian Armijos, Hinsinger, Damien Daniel, Strijk, Joeri Sergej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748805/
https://www.ncbi.nlm.nih.gov/pubmed/33366565
http://dx.doi.org/10.1080/23802359.2019.1703590
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author Carrion, Angelo Damian Armijos
Hinsinger, Damien Daniel
Strijk, Joeri Sergej
author_facet Carrion, Angelo Damian Armijos
Hinsinger, Damien Daniel
Strijk, Joeri Sergej
author_sort Carrion, Angelo Damian Armijos
collection PubMed
description Sinopora hongkongensis is a critically endangered endemic tree species restricted to Hong Kong. Here we report its plastome sequence. The S. hongkongensis plastome was 158,612 bp in length, with a large single-copy (LSC) region of 89,405 bp and a small single-copy (SSC) region of 18,205 bp, separated by two inverted repeat (IR) regions of 25,498 bp. It contained 126 genes, including 89 coding genes, 29 tRNA genes, and 8 rRNA genes. The overall GC content was 39.0%, and 43.0%, 37.7%, and 34.0%, in the IRs, LSC, and SSC regions, respectively. A phylogenetic analysis combining a subset of Lauraceae plastomes with closely related outgroup families confirms the placement of S. hongkongensis in Lauraceae and explores relationships with other genera in the family.
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spelling pubmed-77488052020-12-22 Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae) Carrion, Angelo Damian Armijos Hinsinger, Damien Daniel Strijk, Joeri Sergej Mitochondrial DNA B Resour Mitogenome Announcement Sinopora hongkongensis is a critically endangered endemic tree species restricted to Hong Kong. Here we report its plastome sequence. The S. hongkongensis plastome was 158,612 bp in length, with a large single-copy (LSC) region of 89,405 bp and a small single-copy (SSC) region of 18,205 bp, separated by two inverted repeat (IR) regions of 25,498 bp. It contained 126 genes, including 89 coding genes, 29 tRNA genes, and 8 rRNA genes. The overall GC content was 39.0%, and 43.0%, 37.7%, and 34.0%, in the IRs, LSC, and SSC regions, respectively. A phylogenetic analysis combining a subset of Lauraceae plastomes with closely related outgroup families confirms the placement of S. hongkongensis in Lauraceae and explores relationships with other genera in the family. Taylor & Francis 2020-01-07 /pmc/articles/PMC7748805/ /pubmed/33366565 http://dx.doi.org/10.1080/23802359.2019.1703590 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Carrion, Angelo Damian Armijos
Hinsinger, Damien Daniel
Strijk, Joeri Sergej
Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)
title Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)
title_full Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)
title_fullStr Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)
title_full_unstemmed Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)
title_short Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)
title_sort genomics of the critically endangered monotypic genus sinopora: the plastome of s. hongkongensis (lauraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748805/
https://www.ncbi.nlm.nih.gov/pubmed/33366565
http://dx.doi.org/10.1080/23802359.2019.1703590
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