Cargando…
The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China
We, at first, fully characterized the complete chloroplast genome of the woody bamboo Acidosasa gigantea using genome skimming and focused on comparative analyses among Acidosasa and Indosasa. This newly sequenced chloroplast genome (GenBank NO. MN917206) is a typical circular structure with 139,711...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748808/ https://www.ncbi.nlm.nih.gov/pubmed/33366901 http://dx.doi.org/10.1080/23802359.2020.1726224 |
_version_ | 1783625197447806976 |
---|---|
author | Zheng, Xiao Yang, Meng Ding, Yu-long Lin, Shu-Yan |
author_facet | Zheng, Xiao Yang, Meng Ding, Yu-long Lin, Shu-Yan |
author_sort | Zheng, Xiao |
collection | PubMed |
description | We, at first, fully characterized the complete chloroplast genome of the woody bamboo Acidosasa gigantea using genome skimming and focused on comparative analyses among Acidosasa and Indosasa. This newly sequenced chloroplast genome (GenBank NO. MN917206) is a typical circular structure with 139,711 bp in length and comprises of an 83,295 bp large single-copy (LSC) region, a 12,824 bp small single-copy (SSC) region, and a pair of 21,796 bp inverted repeats (IRs). The GC content of A. gigantea is 38.9% and the sequences contained 132 unique genes were successfully annotated, including 39 tRNA genes, 8 rRNA genes, and 85 protein-coding genes. Phylogenetic analysis shows that A. gigantea is highly clustered in the Arundinaria clade (clade VI) of Arundinarieae, a sister of the clade of Acidosasa purpurea and was not clustered on the same branch as Indosasa sinica. Therefore, it is more accurate to classify A. gigantea into Acidosasa. |
format | Online Article Text |
id | pubmed-7748808 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77488082020-12-22 The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China Zheng, Xiao Yang, Meng Ding, Yu-long Lin, Shu-Yan Mitochondrial DNA B Resour Mitogenome Announcement We, at first, fully characterized the complete chloroplast genome of the woody bamboo Acidosasa gigantea using genome skimming and focused on comparative analyses among Acidosasa and Indosasa. This newly sequenced chloroplast genome (GenBank NO. MN917206) is a typical circular structure with 139,711 bp in length and comprises of an 83,295 bp large single-copy (LSC) region, a 12,824 bp small single-copy (SSC) region, and a pair of 21,796 bp inverted repeats (IRs). The GC content of A. gigantea is 38.9% and the sequences contained 132 unique genes were successfully annotated, including 39 tRNA genes, 8 rRNA genes, and 85 protein-coding genes. Phylogenetic analysis shows that A. gigantea is highly clustered in the Arundinaria clade (clade VI) of Arundinarieae, a sister of the clade of Acidosasa purpurea and was not clustered on the same branch as Indosasa sinica. Therefore, it is more accurate to classify A. gigantea into Acidosasa. Taylor & Francis 2020-02-11 /pmc/articles/PMC7748808/ /pubmed/33366901 http://dx.doi.org/10.1080/23802359.2020.1726224 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zheng, Xiao Yang, Meng Ding, Yu-long Lin, Shu-Yan The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China |
title | The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China |
title_full | The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China |
title_fullStr | The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China |
title_full_unstemmed | The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China |
title_short | The complete chloroplast genome sequence of Acidosasa gigantea (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China |
title_sort | complete chloroplast genome sequence of acidosasa gigantea (bambusoideae: arundinarieae): an ornamental bamboo species endemic to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748808/ https://www.ncbi.nlm.nih.gov/pubmed/33366901 http://dx.doi.org/10.1080/23802359.2020.1726224 |
work_keys_str_mv | AT zhengxiao thecompletechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina AT yangmeng thecompletechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina AT dingyulong thecompletechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina AT linshuyan thecompletechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina AT zhengxiao completechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina AT yangmeng completechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina AT dingyulong completechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina AT linshuyan completechloroplastgenomesequenceofacidosasagiganteabambusoideaearundinarieaeanornamentalbamboospeciesendemictochina |