Cargando…

Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China

Platycladus orientalis belongs to the family Cupressaceae that the branches and leaves is an important Traditional Chinese Medicine in China. In this article, the complete chloroplast genome of P. orientalis was studied and illustrated to add the more genetic information. The chloroplast genome of P...

Descripción completa

Detalles Bibliográficos
Autores principales: Fei, Jun, Shi, Shiyuan, Zu, Gang, Han, Guihe, Lai, Zhen, Cao, Tianyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748822/
https://www.ncbi.nlm.nih.gov/pubmed/33366496
http://dx.doi.org/10.1080/23802359.2019.1699471
_version_ 1783625200771792896
author Fei, Jun
Shi, Shiyuan
Zu, Gang
Han, Guihe
Lai, Zhen
Cao, Tianyi
author_facet Fei, Jun
Shi, Shiyuan
Zu, Gang
Han, Guihe
Lai, Zhen
Cao, Tianyi
author_sort Fei, Jun
collection PubMed
description Platycladus orientalis belongs to the family Cupressaceae that the branches and leaves is an important Traditional Chinese Medicine in China. In this article, the complete chloroplast genome of P. orientalis was studied and illustrated to add the more genetic information. The chloroplast genome of Platycladus orientalis is 1127,113 bp in length as the circular, which exhibits 120 genes, including 83 protein-coding genes (PCG), 33 transfer RNA genes (tRNAs) and 4 ribosomal RNA genes (rRNAs). The overall nucleotide composition of chloroplast genome is: 32.1% of A, 33.2% of T, 17.9% of C, 16.8% of G and the total AT content of 65.3% and GC of 34.7%. Phylogenetic relationship shown that Platycladus orientalis is more closely related to Thuja standishii on genetic relationship using the Maximum-Likelihood (ML) method. The chloroplast genome may contribute to the medicinal valuable and evolutionary studies of this species.
format Online
Article
Text
id pubmed-7748822
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77488222020-12-22 Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China Fei, Jun Shi, Shiyuan Zu, Gang Han, Guihe Lai, Zhen Cao, Tianyi Mitochondrial DNA B Resour Mitogenome Announcement Platycladus orientalis belongs to the family Cupressaceae that the branches and leaves is an important Traditional Chinese Medicine in China. In this article, the complete chloroplast genome of P. orientalis was studied and illustrated to add the more genetic information. The chloroplast genome of Platycladus orientalis is 1127,113 bp in length as the circular, which exhibits 120 genes, including 83 protein-coding genes (PCG), 33 transfer RNA genes (tRNAs) and 4 ribosomal RNA genes (rRNAs). The overall nucleotide composition of chloroplast genome is: 32.1% of A, 33.2% of T, 17.9% of C, 16.8% of G and the total AT content of 65.3% and GC of 34.7%. Phylogenetic relationship shown that Platycladus orientalis is more closely related to Thuja standishii on genetic relationship using the Maximum-Likelihood (ML) method. The chloroplast genome may contribute to the medicinal valuable and evolutionary studies of this species. Taylor & Francis 2019-12-13 /pmc/articles/PMC7748822/ /pubmed/33366496 http://dx.doi.org/10.1080/23802359.2019.1699471 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Fei, Jun
Shi, Shiyuan
Zu, Gang
Han, Guihe
Lai, Zhen
Cao, Tianyi
Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China
title Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China
title_full Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China
title_fullStr Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China
title_full_unstemmed Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China
title_short Characterization of the complete chloroplast genome of Platycladus orientalis (Cupressaceae), an herb to treat lumbar tuberculosis in China
title_sort characterization of the complete chloroplast genome of platycladus orientalis (cupressaceae), an herb to treat lumbar tuberculosis in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748822/
https://www.ncbi.nlm.nih.gov/pubmed/33366496
http://dx.doi.org/10.1080/23802359.2019.1699471
work_keys_str_mv AT feijun characterizationofthecompletechloroplastgenomeofplatycladusorientaliscupressaceaeanherbtotreatlumbartuberculosisinchina
AT shishiyuan characterizationofthecompletechloroplastgenomeofplatycladusorientaliscupressaceaeanherbtotreatlumbartuberculosisinchina
AT zugang characterizationofthecompletechloroplastgenomeofplatycladusorientaliscupressaceaeanherbtotreatlumbartuberculosisinchina
AT hanguihe characterizationofthecompletechloroplastgenomeofplatycladusorientaliscupressaceaeanherbtotreatlumbartuberculosisinchina
AT laizhen characterizationofthecompletechloroplastgenomeofplatycladusorientaliscupressaceaeanherbtotreatlumbartuberculosisinchina
AT caotianyi characterizationofthecompletechloroplastgenomeofplatycladusorientaliscupressaceaeanherbtotreatlumbartuberculosisinchina