The complete chloroplast genome sequence of Fagraea fragrans

The first complete chloroplast genome (cpDNA) sequence of Fagraea fragrans was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,416 bp in length, contains a large single copy region (LSC) of 84,405 bp and a small single copy region (SSC) of 18,285 bp, which wer...

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Detalles Bibliográficos
Autores principales: Zhang, Jinfeng, Li, Yunqing, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748836/
https://www.ncbi.nlm.nih.gov/pubmed/33366715
http://dx.doi.org/10.1080/23802359.2020.1714504
Descripción
Sumario:The first complete chloroplast genome (cpDNA) sequence of Fagraea fragrans was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,416 bp in length, contains a large single copy region (LSC) of 84,405 bp and a small single copy region (SSC) of 18,285 bp, which were separated by a pair of inverted repeats (IR) regions of 25,863 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 36.0%, 31.8%, and 43.4%, respectively. Further phylogenomic analysis showed that F. fragrans in a unique clade in Gentianaceae family.

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