The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae)

Dioscorea persimilis belongs to Dioscorea genus, which is considered as one of the most popular food and traditional folk medicine in China. The complete chloroplast genome of D. persimilis was determined in this study. The total genome size was 153,219 bp in length, containing a pair of inverted re...

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Autores principales: Cao, Tianxu, Zhu, Qianglong, Chen, Xin, Wang, Putao, Shan, Nan, Zhou, Qionghong, Huang, Yingjin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748837/
https://www.ncbi.nlm.nih.gov/pubmed/33366597
http://dx.doi.org/10.1080/23802359.2019.1704645
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author Cao, Tianxu
Zhu, Qianglong
Chen, Xin
Wang, Putao
Shan, Nan
Zhou, Qionghong
Huang, Yingjin
author_facet Cao, Tianxu
Zhu, Qianglong
Chen, Xin
Wang, Putao
Shan, Nan
Zhou, Qionghong
Huang, Yingjin
author_sort Cao, Tianxu
collection PubMed
description Dioscorea persimilis belongs to Dioscorea genus, which is considered as one of the most popular food and traditional folk medicine in China. The complete chloroplast genome of D. persimilis was determined in this study. The total genome size was 153,219 bp in length, containing a pair of inverted repeats (IRs) of 25,477 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 83,448 bp and 18,817 bp, respectively. The GC content is 37.01%. A total of 129 genes were predicted including 84 protein-coding genes, eight rRNA genes and 37 tRNA genes. Phylogenetic tree analysis of 24 species in the genus Dioscorea indicated that D. persimilis was closer to Chinese yam, but has remote phylogenetic relationship with Guinea yam.
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spelling pubmed-77488372020-12-22 The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae) Cao, Tianxu Zhu, Qianglong Chen, Xin Wang, Putao Shan, Nan Zhou, Qionghong Huang, Yingjin Mitochondrial DNA B Resour Mitogenome Announcement Dioscorea persimilis belongs to Dioscorea genus, which is considered as one of the most popular food and traditional folk medicine in China. The complete chloroplast genome of D. persimilis was determined in this study. The total genome size was 153,219 bp in length, containing a pair of inverted repeats (IRs) of 25,477 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 83,448 bp and 18,817 bp, respectively. The GC content is 37.01%. A total of 129 genes were predicted including 84 protein-coding genes, eight rRNA genes and 37 tRNA genes. Phylogenetic tree analysis of 24 species in the genus Dioscorea indicated that D. persimilis was closer to Chinese yam, but has remote phylogenetic relationship with Guinea yam. Taylor & Francis 2020-01-09 /pmc/articles/PMC7748837/ /pubmed/33366597 http://dx.doi.org/10.1080/23802359.2019.1704645 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Cao, Tianxu
Zhu, Qianglong
Chen, Xin
Wang, Putao
Shan, Nan
Zhou, Qionghong
Huang, Yingjin
The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae)
title The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae)
title_full The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae)
title_fullStr The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae)
title_full_unstemmed The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae)
title_short The complete chloroplast genome sequence of the Dioscorea persimilis Prain et Burkill (Dioscoreaceae)
title_sort complete chloroplast genome sequence of the dioscorea persimilis prain et burkill (dioscoreaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748837/
https://www.ncbi.nlm.nih.gov/pubmed/33366597
http://dx.doi.org/10.1080/23802359.2019.1704645
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