The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae)

The first complete chloroplast (cp) genome of Indofevillea khasiana was reported in this study. The I. khasiana cp genome was 159,238 bp in size, with two inverted repeat (IR) regions of 26,275 bp separated by a large single copy (LSC) region of 88,538 bp and a small single copy (SSC) region of 18,1...

Descripción completa

Detalles Bibliográficos
Autores principales: Ling, Li-Zhen, Zhang, Shu-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748840/
https://www.ncbi.nlm.nih.gov/pubmed/33366696
http://dx.doi.org/10.1080/23802359.2020.1711824
_version_ 1783625204711292928
author Ling, Li-Zhen
Zhang, Shu-Dong
author_facet Ling, Li-Zhen
Zhang, Shu-Dong
author_sort Ling, Li-Zhen
collection PubMed
description The first complete chloroplast (cp) genome of Indofevillea khasiana was reported in this study. The I. khasiana cp genome was 159,238 bp in size, with two inverted repeat (IR) regions of 26,275 bp separated by a large single copy (LSC) region of 88,538 bp and a small single copy (SSC) region of 18,150 bp. The cp genome of this species contained 113 genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 36.9%. Phylogenetic analysis based on the cp genome sequences suggests that I. khasiana is sister to the rest species of subfam. Cucurbitoideae.
format Online
Article
Text
id pubmed-7748840
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77488402020-12-22 The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae) Ling, Li-Zhen Zhang, Shu-Dong Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast (cp) genome of Indofevillea khasiana was reported in this study. The I. khasiana cp genome was 159,238 bp in size, with two inverted repeat (IR) regions of 26,275 bp separated by a large single copy (LSC) region of 88,538 bp and a small single copy (SSC) region of 18,150 bp. The cp genome of this species contained 113 genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 36.9%. Phylogenetic analysis based on the cp genome sequences suggests that I. khasiana is sister to the rest species of subfam. Cucurbitoideae. Taylor & Francis 2020-01-16 /pmc/articles/PMC7748840/ /pubmed/33366696 http://dx.doi.org/10.1080/23802359.2020.1711824 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ling, Li-Zhen
Zhang, Shu-Dong
The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae)
title The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae)
title_full The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae)
title_fullStr The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae)
title_full_unstemmed The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae)
title_short The complete chloroplast genome and phylogenetic analysis of Indofevillea khasiana (Cucurbitaceae)
title_sort complete chloroplast genome and phylogenetic analysis of indofevillea khasiana (cucurbitaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748840/
https://www.ncbi.nlm.nih.gov/pubmed/33366696
http://dx.doi.org/10.1080/23802359.2020.1711824
work_keys_str_mv AT linglizhen thecompletechloroplastgenomeandphylogeneticanalysisofindofevilleakhasianacucurbitaceae
AT zhangshudong thecompletechloroplastgenomeandphylogeneticanalysisofindofevilleakhasianacucurbitaceae
AT linglizhen completechloroplastgenomeandphylogeneticanalysisofindofevilleakhasianacucurbitaceae
AT zhangshudong completechloroplastgenomeandphylogeneticanalysisofindofevilleakhasianacucurbitaceae

Ejemplares similares