The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China

Epimedium elachyphyllum, which belongs to Berberidaceae, is only distributed in Guizhou province of China. In this study, the complete chloroplast (cp)genome of E. elachyphyllum was sequenced and assembled. The circular genome is 157,201 bp in length, which comprises of a large single-copy region (L...

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Autores principales: Suo, Fengmei, Liu, Xiang, Zhang, Cheng, Xu, Chaoqun, Sheng, Guoan, Guo, Baolin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748844/
https://www.ncbi.nlm.nih.gov/pubmed/33366859
http://dx.doi.org/10.1080/23802359.2020.1721357
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author Suo, Fengmei
Liu, Xiang
Zhang, Cheng
Xu, Chaoqun
Sheng, Guoan
Guo, Baolin
author_facet Suo, Fengmei
Liu, Xiang
Zhang, Cheng
Xu, Chaoqun
Sheng, Guoan
Guo, Baolin
author_sort Suo, Fengmei
collection PubMed
description Epimedium elachyphyllum, which belongs to Berberidaceae, is only distributed in Guizhou province of China. In this study, the complete chloroplast (cp)genome of E. elachyphyllum was sequenced and assembled. The circular genome is 157,201 bp in length, which comprises of a large single-copy region (LSC, 88,519 bp), a small single-copy region (SSC, 17,042 bp), and a pair of inverted repeat regions (IRa and IRb, 25,820 bp). The genome of E. elachyphyllum contains 112 unique genes, of which 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 18 complete cp genome sequences indicated that E. elachyphyllum was closely related to E. dolichostemon.
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spelling pubmed-77488442020-12-22 The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China Suo, Fengmei Liu, Xiang Zhang, Cheng Xu, Chaoqun Sheng, Guoan Guo, Baolin Mitochondrial DNA B Resour Mitogenome Announcement Epimedium elachyphyllum, which belongs to Berberidaceae, is only distributed in Guizhou province of China. In this study, the complete chloroplast (cp)genome of E. elachyphyllum was sequenced and assembled. The circular genome is 157,201 bp in length, which comprises of a large single-copy region (LSC, 88,519 bp), a small single-copy region (SSC, 17,042 bp), and a pair of inverted repeat regions (IRa and IRb, 25,820 bp). The genome of E. elachyphyllum contains 112 unique genes, of which 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 18 complete cp genome sequences indicated that E. elachyphyllum was closely related to E. dolichostemon. Taylor & Francis 2020-02-03 /pmc/articles/PMC7748844/ /pubmed/33366859 http://dx.doi.org/10.1080/23802359.2020.1721357 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Suo, Fengmei
Liu, Xiang
Zhang, Cheng
Xu, Chaoqun
Sheng, Guoan
Guo, Baolin
The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China
title The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China
title_full The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China
title_fullStr The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China
title_full_unstemmed The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China
title_short The complete chloroplast genome of Epimedium elachyphyllum Stearn (Berberidaceae), an endangered species endemic to China
title_sort complete chloroplast genome of epimedium elachyphyllum stearn (berberidaceae), an endangered species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748844/
https://www.ncbi.nlm.nih.gov/pubmed/33366859
http://dx.doi.org/10.1080/23802359.2020.1721357
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