The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae

Holmskioldia sanguinea Retz. (Lamiaceae) is a widely cultivated ornamental plant. As a first report in the genus, we present the complete chloroplast genome sequence of H. sanguinea using genome skimming of paired-end NGS data. The total genome size measures 153,273 bp in length containing four subr...

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Autores principales: Lee, Yoonkyung, Kim, Sangtae
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748846/
https://www.ncbi.nlm.nih.gov/pubmed/33366801
http://dx.doi.org/10.1080/23802359.2020.1717392
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author Lee, Yoonkyung
Kim, Sangtae
author_facet Lee, Yoonkyung
Kim, Sangtae
author_sort Lee, Yoonkyung
collection PubMed
description Holmskioldia sanguinea Retz. (Lamiaceae) is a widely cultivated ornamental plant. As a first report in the genus, we present the complete chloroplast genome sequence of H. sanguinea using genome skimming of paired-end NGS data. The total genome size measures 153,273 bp in length containing four subregions: 84,693 bp of large single-copy region, 17,330 bp small single-copy region, and a pair of inverted repeat regions, measuring 25,625 bp. The genome contains 115 genes including 80 protein-coding genes, 4 rRNAs, and 31 tRNAs. Phylogenetic analysis showed that H. sanguinea is a sister to Scutellaria in the subfamily Scutellarioideae of Lamiaceae.
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spelling pubmed-77488462020-12-22 The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae Lee, Yoonkyung Kim, Sangtae Mitochondrial DNA B Resour Mitogenome Announcement Holmskioldia sanguinea Retz. (Lamiaceae) is a widely cultivated ornamental plant. As a first report in the genus, we present the complete chloroplast genome sequence of H. sanguinea using genome skimming of paired-end NGS data. The total genome size measures 153,273 bp in length containing four subregions: 84,693 bp of large single-copy region, 17,330 bp small single-copy region, and a pair of inverted repeat regions, measuring 25,625 bp. The genome contains 115 genes including 80 protein-coding genes, 4 rRNAs, and 31 tRNAs. Phylogenetic analysis showed that H. sanguinea is a sister to Scutellaria in the subfamily Scutellarioideae of Lamiaceae. Taylor & Francis 2020-01-27 /pmc/articles/PMC7748846/ /pubmed/33366801 http://dx.doi.org/10.1080/23802359.2020.1717392 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lee, Yoonkyung
Kim, Sangtae
The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae
title The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae
title_full The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae
title_fullStr The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae
title_full_unstemmed The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae
title_short The complete chloroplast genome sequence Holmskioldia sanguinea retz., an ornamental plant of Lamiaceae
title_sort complete chloroplast genome sequence holmskioldia sanguinea retz., an ornamental plant of lamiaceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748846/
https://www.ncbi.nlm.nih.gov/pubmed/33366801
http://dx.doi.org/10.1080/23802359.2020.1717392
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