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Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae)
In this study, the complete mitogenome sequence of Ostrinia furnacalis was described. The assembled mitogenome is 15,241 bp in length with an extreme bias of high AT content (80.9%) (GenBank accession no. MN747041). The mitochondrial genome contains 13 protein-coding genes (PCGs), 22 transfer RNA (t...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748848/ https://www.ncbi.nlm.nih.gov/pubmed/33366817 http://dx.doi.org/10.1080/23802359.2020.1718025 |
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author | Li, Chao Li, Lili Ren, Yanping Lu, Zengbin Song, Yingying Liu, Li Lv, Suhong Yu, Yi Men, Xingyuan |
author_facet | Li, Chao Li, Lili Ren, Yanping Lu, Zengbin Song, Yingying Liu, Li Lv, Suhong Yu, Yi Men, Xingyuan |
author_sort | Li, Chao |
collection | PubMed |
description | In this study, the complete mitogenome sequence of Ostrinia furnacalis was described. The assembled mitogenome is 15,241 bp in length with an extreme bias of high AT content (80.9%) (GenBank accession no. MN747041). The mitochondrial genome contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (12S rRNA and 16S rRNA) genes, and a control region (D-loop region). The mitochondrial gene order was identical to that observed in most lepidopteran genomes, nine PCGs were located on the H-strand, others were located on the L-strand. 12 PCGs were initiated by typical ATN codons, except for COI with CGA instead. 21 tRNAs had the typical cloverleaf structure, while the DHU arm of the trnS1 gene did not form a stable stem-loop structure. The ‘ATAGT(A)’-like motif and a 19 bp poly-T stretch at the down-stream of the rrnS gene were observed in the A + T-rich region. The phylogenetic analysis showed that the relationship of O. furnacalis is very close to the three species in the subfamily Pyraustinae: O. nubilalis, O. penitalis and Loxostege sticticalis, and all the subfamilies of Spilomelinae, Pyraustinae, Crambinae and Nymphulinae within Crambidae formed monophyletic groups with the highest bootstrap value support. |
format | Online Article Text |
id | pubmed-7748848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77488482020-12-22 Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae) Li, Chao Li, Lili Ren, Yanping Lu, Zengbin Song, Yingying Liu, Li Lv, Suhong Yu, Yi Men, Xingyuan Mitochondrial DNA B Resour Mitogenome Announcement In this study, the complete mitogenome sequence of Ostrinia furnacalis was described. The assembled mitogenome is 15,241 bp in length with an extreme bias of high AT content (80.9%) (GenBank accession no. MN747041). The mitochondrial genome contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (12S rRNA and 16S rRNA) genes, and a control region (D-loop region). The mitochondrial gene order was identical to that observed in most lepidopteran genomes, nine PCGs were located on the H-strand, others were located on the L-strand. 12 PCGs were initiated by typical ATN codons, except for COI with CGA instead. 21 tRNAs had the typical cloverleaf structure, while the DHU arm of the trnS1 gene did not form a stable stem-loop structure. The ‘ATAGT(A)’-like motif and a 19 bp poly-T stretch at the down-stream of the rrnS gene were observed in the A + T-rich region. The phylogenetic analysis showed that the relationship of O. furnacalis is very close to the three species in the subfamily Pyraustinae: O. nubilalis, O. penitalis and Loxostege sticticalis, and all the subfamilies of Spilomelinae, Pyraustinae, Crambinae and Nymphulinae within Crambidae formed monophyletic groups with the highest bootstrap value support. Taylor & Francis 2020-01-31 /pmc/articles/PMC7748848/ /pubmed/33366817 http://dx.doi.org/10.1080/23802359.2020.1718025 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Chao Li, Lili Ren, Yanping Lu, Zengbin Song, Yingying Liu, Li Lv, Suhong Yu, Yi Men, Xingyuan Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae) |
title | Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae) |
title_full | Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae) |
title_fullStr | Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae) |
title_full_unstemmed | Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae) |
title_short | Characterization of the complete mitochondrial genome of Asia Corn Borer, Ostrinia furnacalis (Lepidoptera: Crambidae) |
title_sort | characterization of the complete mitochondrial genome of asia corn borer, ostrinia furnacalis (lepidoptera: crambidae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748848/ https://www.ncbi.nlm.nih.gov/pubmed/33366817 http://dx.doi.org/10.1080/23802359.2020.1718025 |
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