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The complete chloroplast genome sequence of Aglaia odorata
The first complete chloroplast genome (cpDNA) sequence of Aglaia odorata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748849/ https://www.ncbi.nlm.nih.gov/pubmed/33366607 http://dx.doi.org/10.1080/23802359.2019.1704649 |
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author | Zhang, Jinfeng Li, Yunqing Wang, Yi |
author_facet | Zhang, Jinfeng Li, Yunqing Wang, Yi |
author_sort | Zhang, Jinfeng |
collection | PubMed |
description | The first complete chloroplast genome (cpDNA) sequence of Aglaia odorata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were separated by a pair of inverted repeats (IR) regions of 27,089 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.5%%, and the corresponding values of the LSC, SSC, and IR regions are 35.5%, 31.8%, and 42.7%, respectively. Further phylogenomic analysis showed that A. odorata, Cipadessa cinerascens and Aphanamixis polystachya clustered in a clade in family Meliaceae. |
format | Online Article Text |
id | pubmed-7748849 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77488492020-12-22 The complete chloroplast genome sequence of Aglaia odorata Zhang, Jinfeng Li, Yunqing Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Aglaia odorata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were separated by a pair of inverted repeats (IR) regions of 27,089 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.5%%, and the corresponding values of the LSC, SSC, and IR regions are 35.5%, 31.8%, and 42.7%, respectively. Further phylogenomic analysis showed that A. odorata, Cipadessa cinerascens and Aphanamixis polystachya clustered in a clade in family Meliaceae. Taylor & Francis 2020-01-10 /pmc/articles/PMC7748849/ /pubmed/33366607 http://dx.doi.org/10.1080/23802359.2019.1704649 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Jinfeng Li, Yunqing Wang, Yi The complete chloroplast genome sequence of Aglaia odorata |
title | The complete chloroplast genome sequence of Aglaia odorata |
title_full | The complete chloroplast genome sequence of Aglaia odorata |
title_fullStr | The complete chloroplast genome sequence of Aglaia odorata |
title_full_unstemmed | The complete chloroplast genome sequence of Aglaia odorata |
title_short | The complete chloroplast genome sequence of Aglaia odorata |
title_sort | complete chloroplast genome sequence of aglaia odorata |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748849/ https://www.ncbi.nlm.nih.gov/pubmed/33366607 http://dx.doi.org/10.1080/23802359.2019.1704649 |
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