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The complete chloroplast genome sequence of Aglaia odorata

The first complete chloroplast genome (cpDNA) sequence of Aglaia odorata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were...

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Autores principales: Zhang, Jinfeng, Li, Yunqing, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748849/
https://www.ncbi.nlm.nih.gov/pubmed/33366607
http://dx.doi.org/10.1080/23802359.2019.1704649
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author Zhang, Jinfeng
Li, Yunqing
Wang, Yi
author_facet Zhang, Jinfeng
Li, Yunqing
Wang, Yi
author_sort Zhang, Jinfeng
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Aglaia odorata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were separated by a pair of inverted repeats (IR) regions of 27,089 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.5%%, and the corresponding values of the LSC, SSC, and IR regions are 35.5%, 31.8%, and 42.7%, respectively. Further phylogenomic analysis showed that A. odorata, Cipadessa cinerascens and Aphanamixis polystachya clustered in a clade in family Meliaceae.
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spelling pubmed-77488492020-12-22 The complete chloroplast genome sequence of Aglaia odorata Zhang, Jinfeng Li, Yunqing Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Aglaia odorata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were separated by a pair of inverted repeats (IR) regions of 27,089 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.5%%, and the corresponding values of the LSC, SSC, and IR regions are 35.5%, 31.8%, and 42.7%, respectively. Further phylogenomic analysis showed that A. odorata, Cipadessa cinerascens and Aphanamixis polystachya clustered in a clade in family Meliaceae. Taylor & Francis 2020-01-10 /pmc/articles/PMC7748849/ /pubmed/33366607 http://dx.doi.org/10.1080/23802359.2019.1704649 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Jinfeng
Li, Yunqing
Wang, Yi
The complete chloroplast genome sequence of Aglaia odorata
title The complete chloroplast genome sequence of Aglaia odorata
title_full The complete chloroplast genome sequence of Aglaia odorata
title_fullStr The complete chloroplast genome sequence of Aglaia odorata
title_full_unstemmed The complete chloroplast genome sequence of Aglaia odorata
title_short The complete chloroplast genome sequence of Aglaia odorata
title_sort complete chloroplast genome sequence of aglaia odorata
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748849/
https://www.ncbi.nlm.nih.gov/pubmed/33366607
http://dx.doi.org/10.1080/23802359.2019.1704649
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