Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub

Camellia brevistyla is an economic species for its seeds with high oil content and ornamental value, which is cultivated widespreadly across southern China. In this study, the complete chloroplast (cp) genome sequence of C. brevistyla was assembled and annotated in order to future genetic research....

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Autores principales: Wang, Yupeng, Li, Jiyuan, Fan, Zhengqi, Wu, Dongyang, Yin, Hengfu, Li, Xinlei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748852/
https://www.ncbi.nlm.nih.gov/pubmed/33366568
http://dx.doi.org/10.1080/23802359.2019.1703607
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author Wang, Yupeng
Li, Jiyuan
Fan, Zhengqi
Wu, Dongyang
Yin, Hengfu
Li, Xinlei
author_facet Wang, Yupeng
Li, Jiyuan
Fan, Zhengqi
Wu, Dongyang
Yin, Hengfu
Li, Xinlei
author_sort Wang, Yupeng
collection PubMed
description Camellia brevistyla is an economic species for its seeds with high oil content and ornamental value, which is cultivated widespreadly across southern China. In this study, the complete chloroplast (cp) genome sequence of C. brevistyla was assembled and annotated in order to future genetic research. The whole cp genome of C. brevistyla is 159,281 bp in size, composed of a small single copy (SSC) region of 15,662 bp and a large single copy (LSC) region of 86,251 bp separated by a pair of inverted repeats (IRs, IRA: 130598: 159281, IRB: 86252: 114935). The overall GC content of C. brevistyla cp genome is 37.19%, with the base content A (31.03%), T (31.78%), C (18.94%), and G (18.25%). Phylogenetic analysis of 20 species based on 74 protein-coding genes shows that C. brevistyla is evolutionarily closest to Camellia danzaiensis.
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spelling pubmed-77488522020-12-22 Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub Wang, Yupeng Li, Jiyuan Fan, Zhengqi Wu, Dongyang Yin, Hengfu Li, Xinlei Mitochondrial DNA B Resour Mitogenome Announcement Camellia brevistyla is an economic species for its seeds with high oil content and ornamental value, which is cultivated widespreadly across southern China. In this study, the complete chloroplast (cp) genome sequence of C. brevistyla was assembled and annotated in order to future genetic research. The whole cp genome of C. brevistyla is 159,281 bp in size, composed of a small single copy (SSC) region of 15,662 bp and a large single copy (LSC) region of 86,251 bp separated by a pair of inverted repeats (IRs, IRA: 130598: 159281, IRB: 86252: 114935). The overall GC content of C. brevistyla cp genome is 37.19%, with the base content A (31.03%), T (31.78%), C (18.94%), and G (18.25%). Phylogenetic analysis of 20 species based on 74 protein-coding genes shows that C. brevistyla is evolutionarily closest to Camellia danzaiensis. Taylor & Francis 2020-01-21 /pmc/articles/PMC7748852/ /pubmed/33366568 http://dx.doi.org/10.1080/23802359.2019.1703607 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Yupeng
Li, Jiyuan
Fan, Zhengqi
Wu, Dongyang
Yin, Hengfu
Li, Xinlei
Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub
title Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub
title_full Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub
title_fullStr Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub
title_full_unstemmed Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub
title_short Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub
title_sort characterization of the complete chloroplast genome of camellia brevistyla, an oil-rich and evergreen shrub
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748852/
https://www.ncbi.nlm.nih.gov/pubmed/33366568
http://dx.doi.org/10.1080/23802359.2019.1703607
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