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The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae)

Though the chloroplast genomes of several Vanda species have been sequenced, there is little information about the complete chloroplast (cp) genome of Vanda coerulescens. Herein, we established the cp genome of V. coerulescens. The chloroplast genome circle was 149,410 bp in length, with the structu...

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Autores principales: Wang, Xiao-ting, Liu, Ding-kun, Zhu, Wei-yao, Zheng, Shu-zhao, Yu, Xiao-yun, Ai, Ye, Zhang, Qing-hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748859/
https://www.ncbi.nlm.nih.gov/pubmed/33366604
http://dx.doi.org/10.1080/23802359.2019.1704195
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author Wang, Xiao-ting
Liu, Ding-kun
Zhu, Wei-yao
Zheng, Shu-zhao
Yu, Xiao-yun
Ai, Ye
Zhang, Qing-hua
author_facet Wang, Xiao-ting
Liu, Ding-kun
Zhu, Wei-yao
Zheng, Shu-zhao
Yu, Xiao-yun
Ai, Ye
Zhang, Qing-hua
author_sort Wang, Xiao-ting
collection PubMed
description Though the chloroplast genomes of several Vanda species have been sequenced, there is little information about the complete chloroplast (cp) genome of Vanda coerulescens. Herein, we established the cp genome of V. coerulescens. The chloroplast genome circle was 149,410 bp in length, with the structure of an 85,954 bp large single-copy (LSC) region and a 11,526 bp small single-copy (SSC) region, which separated by two inverted repeat (IRs) regions of 25,965 bp. It encoded 130 genes, including 74 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The overall GC-content of the whole plastome is 36.7%, whereas the corresponding values of the LSC, SSC, and IR regions ranged from 28.2% to 43.1%. In addition, the phylogenetic analysis base on 20 chloroplast genomes of Orchidaceae indicates that V. brunnea is closely related to V. coerulescens. This announcement of the complete V. coerulescens cp genome sequence could provide valuable information for further genetic modification and phylogenetic study in Vanda genus.
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spelling pubmed-77488592020-12-22 The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae) Wang, Xiao-ting Liu, Ding-kun Zhu, Wei-yao Zheng, Shu-zhao Yu, Xiao-yun Ai, Ye Zhang, Qing-hua Mitochondrial DNA B Resour Mitogenome Announcement Though the chloroplast genomes of several Vanda species have been sequenced, there is little information about the complete chloroplast (cp) genome of Vanda coerulescens. Herein, we established the cp genome of V. coerulescens. The chloroplast genome circle was 149,410 bp in length, with the structure of an 85,954 bp large single-copy (LSC) region and a 11,526 bp small single-copy (SSC) region, which separated by two inverted repeat (IRs) regions of 25,965 bp. It encoded 130 genes, including 74 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The overall GC-content of the whole plastome is 36.7%, whereas the corresponding values of the LSC, SSC, and IR regions ranged from 28.2% to 43.1%. In addition, the phylogenetic analysis base on 20 chloroplast genomes of Orchidaceae indicates that V. brunnea is closely related to V. coerulescens. This announcement of the complete V. coerulescens cp genome sequence could provide valuable information for further genetic modification and phylogenetic study in Vanda genus. Taylor & Francis 2020-01-10 /pmc/articles/PMC7748859/ /pubmed/33366604 http://dx.doi.org/10.1080/23802359.2019.1704195 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Xiao-ting
Liu, Ding-kun
Zhu, Wei-yao
Zheng, Shu-zhao
Yu, Xiao-yun
Ai, Ye
Zhang, Qing-hua
The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae)
title The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae)
title_full The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae)
title_fullStr The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae)
title_full_unstemmed The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae)
title_short The complete chloroplast genome of an ornamental orchid, Vanda coerulescens (Orchidaceae)
title_sort complete chloroplast genome of an ornamental orchid, vanda coerulescens (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748859/
https://www.ncbi.nlm.nih.gov/pubmed/33366604
http://dx.doi.org/10.1080/23802359.2019.1704195
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