The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China

Clematis guniuensis is a new plant species in China, which distributes in both provinces of Zhejiang and Anhui with extremely small population. The whole chloroplast (CP) genome was assembled by NovoPlasty using high-throughput sequencing data generated by an Illumina Hiseq X Ten platform. The circu...

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Detalles Bibliográficos
Autores principales: Jiang, Ming, Wang, Junfeng, Zhang, Huijuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748863/
https://www.ncbi.nlm.nih.gov/pubmed/33366579
http://dx.doi.org/10.1080/23802359.2019.1704662
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author Jiang, Ming
Wang, Junfeng
Zhang, Huijuan
author_facet Jiang, Ming
Wang, Junfeng
Zhang, Huijuan
author_sort Jiang, Ming
collection PubMed
description Clematis guniuensis is a new plant species in China, which distributes in both provinces of Zhejiang and Anhui with extremely small population. The whole chloroplast (CP) genome was assembled by NovoPlasty using high-throughput sequencing data generated by an Illumina Hiseq X Ten platform. The circular chloroplast genome is 159,682 bp in length, and comprises a large single copy of 79,461 bp, a small single copy of 49,156 bp, and two inverted repeats of 31,064 bp each. The CP genome contains 137 genes, including 89 protein-coding genes, eight rRNA genes, 36 tRNA genes, and four pseudogenes. All the pseudogenes were infA, rpl32, ycf1, and ndhK. Phylogenetic analysis results indicated that C. guniuensis was sister to C. trichotoma, with a support rate of 100%.
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spelling pubmed-77488632020-12-22 The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China Jiang, Ming Wang, Junfeng Zhang, Huijuan Mitochondrial DNA B Resour Mitogenome Announcement Clematis guniuensis is a new plant species in China, which distributes in both provinces of Zhejiang and Anhui with extremely small population. The whole chloroplast (CP) genome was assembled by NovoPlasty using high-throughput sequencing data generated by an Illumina Hiseq X Ten platform. The circular chloroplast genome is 159,682 bp in length, and comprises a large single copy of 79,461 bp, a small single copy of 49,156 bp, and two inverted repeats of 31,064 bp each. The CP genome contains 137 genes, including 89 protein-coding genes, eight rRNA genes, 36 tRNA genes, and four pseudogenes. All the pseudogenes were infA, rpl32, ycf1, and ndhK. Phylogenetic analysis results indicated that C. guniuensis was sister to C. trichotoma, with a support rate of 100%. Taylor & Francis 2020-01-07 /pmc/articles/PMC7748863/ /pubmed/33366579 http://dx.doi.org/10.1080/23802359.2019.1704662 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jiang, Ming
Wang, Junfeng
Zhang, Huijuan
The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China
title The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China
title_full The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China
title_fullStr The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China
title_full_unstemmed The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China
title_short The complete plastome sequence of Clematis guniuensis (Ranunculaceae), a new plant species endemic to China
title_sort complete plastome sequence of clematis guniuensis (ranunculaceae), a new plant species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748863/
https://www.ncbi.nlm.nih.gov/pubmed/33366579
http://dx.doi.org/10.1080/23802359.2019.1704662
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