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Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis
The complete mitogenome sequence of Blarinella griselda was determined using long PCR. The genome was 16,947 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the he...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748876/ https://www.ncbi.nlm.nih.gov/pubmed/33366829 http://dx.doi.org/10.1080/23802359.2020.1715305 |
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author | Zhu, Liu Qiao-Jiang, Yang Chun-Yu, Xu Chen, Wang Qing-Qing, Wang Wen-Jing, Jiang |
author_facet | Zhu, Liu Qiao-Jiang, Yang Chun-Yu, Xu Chen, Wang Qing-Qing, Wang Wen-Jing, Jiang |
author_sort | Zhu, Liu |
collection | PubMed |
description | The complete mitogenome sequence of Blarinella griselda was determined using long PCR. The genome was 16,947 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (33.1%), C (22.6%), T (31.6%) and G (12.7%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Blarinella griselda in Soricidae at the molecular level. The mitochondrial genome would be a significant supplement for the Blarinella griselda genetic background. The three Blarinella species formed a monophyletic group with the high bootstrap value (100%) in all examinations. |
format | Online Article Text |
id | pubmed-7748876 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77488762020-12-22 Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis Zhu, Liu Qiao-Jiang, Yang Chun-Yu, Xu Chen, Wang Qing-Qing, Wang Wen-Jing, Jiang Mitochondrial DNA B Resour Mitogenome Announcement The complete mitogenome sequence of Blarinella griselda was determined using long PCR. The genome was 16,947 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (33.1%), C (22.6%), T (31.6%) and G (12.7%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Blarinella griselda in Soricidae at the molecular level. The mitochondrial genome would be a significant supplement for the Blarinella griselda genetic background. The three Blarinella species formed a monophyletic group with the high bootstrap value (100%) in all examinations. Taylor & Francis 2020-02-02 /pmc/articles/PMC7748876/ /pubmed/33366829 http://dx.doi.org/10.1080/23802359.2020.1715305 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhu, Liu Qiao-Jiang, Yang Chun-Yu, Xu Chen, Wang Qing-Qing, Wang Wen-Jing, Jiang Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis |
title | Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis |
title_full | Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis |
title_fullStr | Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis |
title_full_unstemmed | Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis |
title_short | Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis |
title_sort | sequencing and analysis of the complete mitochondrial genome of blarinella griselda from china and its phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748876/ https://www.ncbi.nlm.nih.gov/pubmed/33366829 http://dx.doi.org/10.1080/23802359.2020.1715305 |
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