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Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics

An understanding of left ventricle (LV) mechanics is fundamental for designing better preventive, diagnostic, and treatment strategies for improved heart function. Because of the costs of clinical and experimental studies to treat and understand heart function, respectively, in-silico models play an...

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Autores principales: Dabiri, Yaghoub, Van der Velden, Alex, Sack, Kevin L., Choy, Jenny S., Guccione, Julius M., Kassab, Ghassan S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749109/
https://www.ncbi.nlm.nih.gov/pubmed/33339836
http://dx.doi.org/10.1038/s41598-020-79191-4
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author Dabiri, Yaghoub
Van der Velden, Alex
Sack, Kevin L.
Choy, Jenny S.
Guccione, Julius M.
Kassab, Ghassan S.
author_facet Dabiri, Yaghoub
Van der Velden, Alex
Sack, Kevin L.
Choy, Jenny S.
Guccione, Julius M.
Kassab, Ghassan S.
author_sort Dabiri, Yaghoub
collection PubMed
description An understanding of left ventricle (LV) mechanics is fundamental for designing better preventive, diagnostic, and treatment strategies for improved heart function. Because of the costs of clinical and experimental studies to treat and understand heart function, respectively, in-silico models play an important role. Finite element (FE) models, which have been used to create in-silico LV models for different cardiac health and disease conditions, as well as cardiac device design, are time-consuming and require powerful computational resources, which limits their use when real-time results are needed. As an alternative, we sought to use deep learning (DL) for LV in-silico modeling. We used 80 four-chamber heart FE models for feed forward, as well as recurrent neural network (RNN) with long short-term memory (LSTM) models for LV pressure and volume. We used 120 LV-only FE models for training LV stress predictions. The active material properties of the myocardium and time were features for the LV pressure and volume training, and passive material properties and element centroid coordinates were features of the LV stress prediction models. For six test FE models, the DL error for LV volume was 1.599 ± 1.227 ml, and the error for pressure was 1.257 ± 0.488 mmHg; for 20 LV FE test examples, the mean absolute errors were, respectively, 0.179 ± 0.050 for myofiber, 0.049 ± 0.017 for cross-fiber, and 0.039 ± 0.011 kPa for shear stress. After training, the DL runtime was in the order of seconds whereas equivalent FE runtime was in the order of several hours (pressure and volume) or 20 min (stress). We conclude that using DL, LV in-silico simulations can be provided for applications requiring real-time results.
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spelling pubmed-77491092020-12-22 Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics Dabiri, Yaghoub Van der Velden, Alex Sack, Kevin L. Choy, Jenny S. Guccione, Julius M. Kassab, Ghassan S. Sci Rep Article An understanding of left ventricle (LV) mechanics is fundamental for designing better preventive, diagnostic, and treatment strategies for improved heart function. Because of the costs of clinical and experimental studies to treat and understand heart function, respectively, in-silico models play an important role. Finite element (FE) models, which have been used to create in-silico LV models for different cardiac health and disease conditions, as well as cardiac device design, are time-consuming and require powerful computational resources, which limits their use when real-time results are needed. As an alternative, we sought to use deep learning (DL) for LV in-silico modeling. We used 80 four-chamber heart FE models for feed forward, as well as recurrent neural network (RNN) with long short-term memory (LSTM) models for LV pressure and volume. We used 120 LV-only FE models for training LV stress predictions. The active material properties of the myocardium and time were features for the LV pressure and volume training, and passive material properties and element centroid coordinates were features of the LV stress prediction models. For six test FE models, the DL error for LV volume was 1.599 ± 1.227 ml, and the error for pressure was 1.257 ± 0.488 mmHg; for 20 LV FE test examples, the mean absolute errors were, respectively, 0.179 ± 0.050 for myofiber, 0.049 ± 0.017 for cross-fiber, and 0.039 ± 0.011 kPa for shear stress. After training, the DL runtime was in the order of seconds whereas equivalent FE runtime was in the order of several hours (pressure and volume) or 20 min (stress). We conclude that using DL, LV in-silico simulations can be provided for applications requiring real-time results. Nature Publishing Group UK 2020-12-18 /pmc/articles/PMC7749109/ /pubmed/33339836 http://dx.doi.org/10.1038/s41598-020-79191-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Dabiri, Yaghoub
Van der Velden, Alex
Sack, Kevin L.
Choy, Jenny S.
Guccione, Julius M.
Kassab, Ghassan S.
Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics
title Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics
title_full Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics
title_fullStr Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics
title_full_unstemmed Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics
title_short Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics
title_sort application of feed forward and recurrent neural networks in simulation of left ventricular mechanics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749109/
https://www.ncbi.nlm.nih.gov/pubmed/33339836
http://dx.doi.org/10.1038/s41598-020-79191-4
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